Hb_000140_090

Information

Type -
Description -
Location Contig140: 77344-87884
Sequence    

Annotation

kegg
ID rcu:RCOM_1616510
description 2-hydroxyacid dehydrogenase, putative (EC:1.1.1.29)
nr
ID XP_012083311.1
description PREDICTED: C-terminal binding protein AN [Jatropha curcas]
swissprot
ID O23702
description C-terminal binding protein AN OS=Arabidopsis thaliana GN=AN PE=1 SV=1
trembl
ID B9RDX6
description 2-hydroxyacid dehydrogenase, putative OS=Ricinus communis GN=RCOM_1616510 PE=4 SV=1
Gene Ontology
ID GO:0005802
description c-terminal binding protein an

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10823: 77366-79853 , PASA_asmbl_10824: 83343-86583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_090 0.0 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
2 Hb_006740_030 0.0485433752 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
3 Hb_000928_070 0.064320123 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
4 Hb_001541_120 0.0677871356 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
5 Hb_007533_040 0.0710947245 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_005016_040 0.0789670186 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
7 Hb_010578_080 0.0790862194 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
8 Hb_003913_130 0.0799305143 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
9 Hb_000288_030 0.0800249338 - - PREDICTED: syntaxin-32 [Jatropha curcas]
10 Hb_000080_130 0.0823905345 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
11 Hb_005167_010 0.0827387766 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
12 Hb_000454_090 0.0839688377 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
13 Hb_005653_070 0.0843219297 - - K+ transport growth defect-like protein [Hevea brasiliensis]
14 Hb_004429_020 0.0862030227 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
15 Hb_000920_200 0.0871160672 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
16 Hb_003360_040 0.08807515 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
17 Hb_001195_060 0.0887101572 - - Protein yrdA, putative [Ricinus communis]
18 Hb_002534_100 0.0892899823 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
19 Hb_006132_090 0.0893482762 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
20 Hb_004109_220 0.0894222942 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]

Gene co-expression network

sample Hb_000140_090 Hb_000140_090 Hb_006740_030 Hb_006740_030 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_007533_040 Hb_007533_040 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080 Hb_006740_030--Hb_001541_120 Hb_006740_030--Hb_000928_070 Hb_000811_070 Hb_000811_070 Hb_006740_030--Hb_000811_070 Hb_008421_020 Hb_008421_020 Hb_006740_030--Hb_008421_020 Hb_006740_030--Hb_007533_040 Hb_000928_070--Hb_001541_120 Hb_000288_030 Hb_000288_030 Hb_000928_070--Hb_000288_030 Hb_000856_010 Hb_000856_010 Hb_000928_070--Hb_000856_010 Hb_012022_040 Hb_012022_040 Hb_000928_070--Hb_012022_040 Hb_003582_060 Hb_003582_060 Hb_000928_070--Hb_003582_060 Hb_001766_050 Hb_001766_050 Hb_001541_120--Hb_001766_050 Hb_001541_120--Hb_008421_020 Hb_003124_150 Hb_003124_150 Hb_001541_120--Hb_003124_150 Hb_004583_010 Hb_004583_010 Hb_007533_040--Hb_004583_010 Hb_003913_130 Hb_003913_130 Hb_007533_040--Hb_003913_130 Hb_001357_200 Hb_001357_200 Hb_007533_040--Hb_001357_200 Hb_005601_040 Hb_005601_040 Hb_007533_040--Hb_005601_040 Hb_005016_040--Hb_008421_020 Hb_013405_020 Hb_013405_020 Hb_005016_040--Hb_013405_020 Hb_005016_040--Hb_000811_070 Hb_005167_010 Hb_005167_010 Hb_005016_040--Hb_005167_010 Hb_000080_130 Hb_000080_130 Hb_005016_040--Hb_000080_130 Hb_062226_130 Hb_062226_130 Hb_010578_080--Hb_062226_130 Hb_009296_070 Hb_009296_070 Hb_010578_080--Hb_009296_070 Hb_004712_210 Hb_004712_210 Hb_010578_080--Hb_004712_210 Hb_000392_420 Hb_000392_420 Hb_010578_080--Hb_000392_420 Hb_002534_100 Hb_002534_100 Hb_010578_080--Hb_002534_100 Hb_000365_230 Hb_000365_230 Hb_010578_080--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50058 4.86053 7.73483 8.07039 3.1459 3.1143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68732 8.79986 8.67052 5.05832 7.72143

CAGE analysis