Hb_000140_160

Information

Type -
Description -
Location Contig140: 121291-123625
Sequence    

Annotation

kegg
ID gmx:100305540
description uncharacterized LOC100305540
nr
ID XP_012437685.1
description PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2U1M8
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G119800 PE=4 SV=1
Gene Ontology
ID GO:0046872
description heavy-metal-associated domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10825: 122198-122545 , PASA_asmbl_10826: 121943-123069 , PASA_asmbl_10827: 123341-123643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_160 0.0 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
2 Hb_001045_050 0.1394029077 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
3 Hb_027445_090 0.1839074393 - - oleosin 18.2 kDa-like [Jatropha curcas]
4 Hb_000256_100 0.1850342351 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
5 Hb_000500_110 0.1864083577 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_001190_060 0.1918086574 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
7 Hb_000007_110 0.1933590668 - - PREDICTED: peroxidase 11 [Jatropha curcas]
8 Hb_002006_140 0.212052762 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
9 Hb_000926_130 0.2144534106 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_000056_330 0.2158957948 - - unnamed protein product [Vitis vinifera]
11 Hb_003096_050 0.2163654725 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003057_080 0.2179043528 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
13 Hb_007894_250 0.2229504248 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
14 Hb_024621_030 0.2269270778 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
15 Hb_002311_240 0.2295449735 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
16 Hb_006478_180 0.2299961885 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
17 Hb_003538_020 0.2339347687 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
18 Hb_000032_580 0.2430452015 - - hypothetical protein RCOM_1311780 [Ricinus communis]
19 Hb_003992_250 0.2435825782 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
20 Hb_003435_060 0.2437349486 - - carbonic anhydrase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_160 Hb_000140_160 Hb_001045_050 Hb_001045_050 Hb_000140_160--Hb_001045_050 Hb_027445_090 Hb_027445_090 Hb_000140_160--Hb_027445_090 Hb_000256_100 Hb_000256_100 Hb_000140_160--Hb_000256_100 Hb_000500_110 Hb_000500_110 Hb_000140_160--Hb_000500_110 Hb_001190_060 Hb_001190_060 Hb_000140_160--Hb_001190_060 Hb_000007_110 Hb_000007_110 Hb_000140_160--Hb_000007_110 Hb_001101_030 Hb_001101_030 Hb_001045_050--Hb_001101_030 Hb_002006_140 Hb_002006_140 Hb_001045_050--Hb_002006_140 Hb_003435_060 Hb_003435_060 Hb_001045_050--Hb_003435_060 Hb_001045_050--Hb_000500_110 Hb_000597_110 Hb_000597_110 Hb_001045_050--Hb_000597_110 Hb_027445_090--Hb_000256_100 Hb_006478_180 Hb_006478_180 Hb_027445_090--Hb_006478_180 Hb_008406_010 Hb_008406_010 Hb_027445_090--Hb_008406_010 Hb_003538_020 Hb_003538_020 Hb_027445_090--Hb_003538_020 Hb_080225_010 Hb_080225_010 Hb_027445_090--Hb_080225_010 Hb_003057_080 Hb_003057_080 Hb_027445_090--Hb_003057_080 Hb_000256_100--Hb_080225_010 Hb_002057_010 Hb_002057_010 Hb_000256_100--Hb_002057_010 Hb_005000_040 Hb_005000_040 Hb_000256_100--Hb_005000_040 Hb_000256_100--Hb_003057_080 Hb_000617_340 Hb_000617_340 Hb_000256_100--Hb_000617_340 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000926_130 Hb_000926_130 Hb_000500_110--Hb_000926_130 Hb_000045_230 Hb_000045_230 Hb_000500_110--Hb_000045_230 Hb_007072_020 Hb_007072_020 Hb_000500_110--Hb_007072_020 Hb_003096_050 Hb_003096_050 Hb_001190_060--Hb_003096_050 Hb_000816_120 Hb_000816_120 Hb_001190_060--Hb_000816_120 Hb_000056_330 Hb_000056_330 Hb_001190_060--Hb_000056_330 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_002311_240 Hb_002311_240 Hb_001190_060--Hb_002311_240 Hb_000135_050 Hb_000135_050 Hb_000007_110--Hb_000135_050 Hb_000010_120 Hb_000010_120 Hb_000007_110--Hb_000010_120 Hb_159769_010 Hb_159769_010 Hb_000007_110--Hb_159769_010 Hb_176979_010 Hb_176979_010 Hb_000007_110--Hb_176979_010 Hb_000007_110--Hb_006478_180 Hb_000007_110--Hb_003538_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.787563 17.4533 1.40924 9.51551 0.142542 0.10042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8305 30.7532 4.68566 178.758 0.32051

CAGE analysis