Hb_000140_230

Information

Type -
Description -
Location Contig140: 220998-223307
Sequence    

Annotation

kegg
ID tcc:TCM_005260
description Pentatricopeptide repeat superfamily protein, putative
nr
ID XP_012083305.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9M316
description Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2 SV=1
trembl
ID A0A061DUV4
description Pentatricopeptide repeat superfamily protein, putative OS=Theobroma cacao GN=TCM_005260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_230 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
2 Hb_000264_320 0.0725946093 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
3 Hb_003020_050 0.0769431208 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002316_150 0.0771798907 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_168697_010 0.0790427899 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
6 Hb_008775_040 0.0804686284 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
7 Hb_048219_010 0.085446507 - - coronatine-insensitive 1 [Hevea brasiliensis]
8 Hb_008500_010 0.0855186878 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
9 Hb_001818_070 0.0855207041 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_000676_010 0.089550718 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
11 Hb_001085_060 0.0902661101 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
12 Hb_009486_200 0.0955596522 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
13 Hb_000866_120 0.095586427 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
14 Hb_000392_150 0.0972205675 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
15 Hb_001584_150 0.0972491775 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
16 Hb_000204_210 0.0972926254 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
17 Hb_003455_020 0.0977761945 - - PREDICTED: transportin-1 [Jatropha curcas]
18 Hb_001141_390 0.0984955206 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
19 Hb_001366_310 0.0994069578 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
20 Hb_003467_020 0.101076363 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_000140_230 Hb_000140_230 Hb_000264_320 Hb_000264_320 Hb_000140_230--Hb_000264_320 Hb_003020_050 Hb_003020_050 Hb_000140_230--Hb_003020_050 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_168697_010 Hb_168697_010 Hb_000140_230--Hb_168697_010 Hb_008775_040 Hb_008775_040 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_000264_320--Hb_008775_040 Hb_002636_100 Hb_002636_100 Hb_000264_320--Hb_002636_100 Hb_000264_320--Hb_003020_050 Hb_000175_220 Hb_000175_220 Hb_000264_320--Hb_000175_220 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070 Hb_003020_050--Hb_008775_040 Hb_073562_010 Hb_073562_010 Hb_003020_050--Hb_073562_010 Hb_001956_200 Hb_001956_200 Hb_003020_050--Hb_001956_200 Hb_003020_050--Hb_168697_010 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_000270_670 Hb_000270_670 Hb_002316_150--Hb_000270_670 Hb_007441_220 Hb_007441_220 Hb_002316_150--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_168697_010--Hb_048219_010 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200 Hb_008775_040--Hb_000175_220 Hb_008775_040--Hb_002636_100 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_012564_030 Hb_012564_030 Hb_048219_010--Hb_012564_030 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_001856_230 Hb_001856_230 Hb_048219_010--Hb_001856_230 Hb_003544_110 Hb_003544_110 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76698 5.05345 1.93624 1.74669 3.03141 3.7778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.50206 2.69721 5.96936 2.76961 2.37901

CAGE analysis