Hb_000140_260

Information

Type -
Description -
Location Contig140: 253769-254437
Sequence    

Annotation

kegg
ID rcu:RCOM_1616750
description hypothetical protein
nr
ID XP_012083298.1
description PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14326 PE=4 SV=1
Gene Ontology
ID GO:0005886
description late embryogenesis abundant hydroxyproline-rich glycoprotein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_J23.ab1: 253693-254444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_260 0.0 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
2 Hb_004200_040 0.0466883008 - - laccase, putative [Ricinus communis]
3 Hb_000205_210 0.0587219152 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
4 Hb_027141_010 0.0597666024 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_076895_020 0.0829185154 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
6 Hb_000539_080 0.083807186 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
7 Hb_000984_080 0.0873258248 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
8 Hb_003900_050 0.0949712553 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
9 Hb_004463_040 0.0959206062 - - -
10 Hb_000081_020 0.0981424785 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
11 Hb_000497_120 0.0997459497 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020332_040 0.1003473224 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
13 Hb_031340_030 0.1018183609 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
14 Hb_005064_040 0.1068502359 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
15 Hb_012660_010 0.1073526843 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
16 Hb_002110_270 0.1149039314 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
17 Hb_004190_010 0.1159891622 - - unnamed protein product [Vitis vinifera]
18 Hb_000939_030 0.1187390919 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
19 Hb_011486_030 0.1199081952 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
20 Hb_000684_020 0.1201825378 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_260 Hb_000140_260 Hb_004200_040 Hb_004200_040 Hb_000140_260--Hb_004200_040 Hb_000205_210 Hb_000205_210 Hb_000140_260--Hb_000205_210 Hb_027141_010 Hb_027141_010 Hb_000140_260--Hb_027141_010 Hb_076895_020 Hb_076895_020 Hb_000140_260--Hb_076895_020 Hb_000539_080 Hb_000539_080 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_004200_040--Hb_000205_210 Hb_003900_050 Hb_003900_050 Hb_004200_040--Hb_003900_050 Hb_004463_040 Hb_004463_040 Hb_004200_040--Hb_004463_040 Hb_004200_040--Hb_027141_010 Hb_000684_020 Hb_000684_020 Hb_004200_040--Hb_000684_020 Hb_000205_210--Hb_003900_050 Hb_000205_210--Hb_027141_010 Hb_001105_200 Hb_001105_200 Hb_000205_210--Hb_001105_200 Hb_000205_210--Hb_000984_080 Hb_027141_010--Hb_076895_020 Hb_020332_040 Hb_020332_040 Hb_027141_010--Hb_020332_040 Hb_027141_010--Hb_000539_080 Hb_076895_020--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_076895_020--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_076895_020--Hb_006006_070 Hb_076895_020--Hb_000984_080 Hb_000758_030 Hb_000758_030 Hb_076895_020--Hb_000758_030 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_000539_080--Hb_002110_270 Hb_000539_080--Hb_006006_070 Hb_000984_080--Hb_000539_080 Hb_000984_080--Hb_002110_270 Hb_000984_080--Hb_000758_030 Hb_000984_080--Hb_006006_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 11.4477 0.788864 6.66803 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.120288 58.8306 3.46491

CAGE analysis