Hb_000140_270

Information

Type -
Description -
Location Contig140: 257056-260382
Sequence    

Annotation

kegg
ID tcc:TCM_005248
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
nr
ID XP_007051690.1
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
swissprot
ID Q9M313
description RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1
trembl
ID A0A061DTX0
description S-adenosyl-L-methionine-dependent methyltransferases superfamily protein OS=Theobroma cacao GN=TCM_005248 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_270 0.0 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
2 Hb_140627_010 0.0986212354 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012022_170 0.1164457345 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
4 Hb_007741_100 0.1173587411 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
5 Hb_027298_010 0.1361774642 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019762_050 0.1377618291 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
7 Hb_000457_290 0.1440133521 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_001214_180 0.1453248311 - - -
9 Hb_002811_150 0.1456726158 - - PREDICTED: uncharacterized protein LOC105647666 [Jatropha curcas]
10 Hb_000403_070 0.1500851365 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_146680_010 0.1542343346 - - hypothetical protein JCGZ_15486 [Jatropha curcas]
12 Hb_002171_030 0.15596312 - - plastid acyl-ACP thioesterase [Vernicia fordii]
13 Hb_006153_060 0.1567118326 - - catalytic, putative [Ricinus communis]
14 Hb_000035_480 0.1569421912 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
15 Hb_001138_060 0.1570754231 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
16 Hb_001711_120 0.1585784876 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
17 Hb_006846_150 0.1598963356 - - conserved hypothetical protein [Ricinus communis]
18 Hb_042202_060 0.1609014035 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
19 Hb_000622_290 0.1619255653 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
20 Hb_001629_090 0.1632433405 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000140_270 Hb_000140_270 Hb_140627_010 Hb_140627_010 Hb_000140_270--Hb_140627_010 Hb_012022_170 Hb_012022_170 Hb_000140_270--Hb_012022_170 Hb_007741_100 Hb_007741_100 Hb_000140_270--Hb_007741_100 Hb_027298_010 Hb_027298_010 Hb_000140_270--Hb_027298_010 Hb_019762_050 Hb_019762_050 Hb_000140_270--Hb_019762_050 Hb_000457_290 Hb_000457_290 Hb_000140_270--Hb_000457_290 Hb_000035_480 Hb_000035_480 Hb_140627_010--Hb_000035_480 Hb_000403_070 Hb_000403_070 Hb_140627_010--Hb_000403_070 Hb_140627_010--Hb_000457_290 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_000392_550 Hb_000392_550 Hb_140627_010--Hb_000392_550 Hb_012022_170--Hb_140627_010 Hb_012022_170--Hb_000035_480 Hb_012022_170--Hb_001240_010 Hb_003020_260 Hb_003020_260 Hb_012022_170--Hb_003020_260 Hb_100886_010 Hb_100886_010 Hb_012022_170--Hb_100886_010 Hb_001097_090 Hb_001097_090 Hb_007741_100--Hb_001097_090 Hb_000928_060 Hb_000928_060 Hb_007741_100--Hb_000928_060 Hb_007741_100--Hb_019762_050 Hb_042202_060 Hb_042202_060 Hb_007741_100--Hb_042202_060 Hb_007741_100--Hb_027298_010 Hb_027298_010--Hb_019762_050 Hb_027298_010--Hb_000392_550 Hb_000032_370 Hb_000032_370 Hb_027298_010--Hb_000032_370 Hb_065525_120 Hb_065525_120 Hb_027298_010--Hb_065525_120 Hb_027298_010--Hb_140627_010 Hb_009780_050 Hb_009780_050 Hb_027298_010--Hb_009780_050 Hb_019762_050--Hb_000457_290 Hb_019762_050--Hb_000403_070 Hb_019762_050--Hb_000032_370 Hb_019762_050--Hb_140627_010 Hb_001575_060 Hb_001575_060 Hb_019762_050--Hb_001575_060 Hb_000465_070 Hb_000465_070 Hb_000457_290--Hb_000465_070 Hb_000457_290--Hb_000035_480 Hb_000457_290--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000457_290--Hb_001892_070 Hb_002232_060 Hb_002232_060 Hb_000457_290--Hb_002232_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.760094 1.54596 2.44556 1.90388 0.803543 0.826142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43021 5.84877 3.70672 1.60654 7.22257

CAGE analysis