Hb_000140_290

Information

Type -
Description -
Location Contig140: 270199-275288
Sequence    

Annotation

kegg
ID rcu:RCOM_1616990
description hypothetical protein
nr
ID XP_011037199.1
description PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
swissprot
ID Q8VYD3
description U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Arabidopsis thaliana GN=SNRNP59 PE=2 SV=1
trembl
ID A0A0D2QR62
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G158000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10848: 270255-270602 , PASA_asmbl_10849: 270666-275232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_290 0.0 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
2 Hb_005634_010 0.0553259169 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_010142_020 0.0567465926 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000556_120 0.057091858 - - Spastin, putative [Ricinus communis]
5 Hb_001500_140 0.0580145922 - - pelota, putative [Ricinus communis]
6 Hb_093458_040 0.0595033796 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_013726_090 0.0671378567 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_002989_020 0.0677311526 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
9 Hb_012498_010 0.0682897033 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
10 Hb_000329_060 0.0687051583 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
11 Hb_007481_010 0.0694741634 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
12 Hb_000138_100 0.0700226279 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
13 Hb_011063_050 0.0707982014 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
14 Hb_003883_060 0.0708952199 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
15 Hb_000011_060 0.071867407 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
16 Hb_102698_010 0.0724379434 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
17 Hb_002728_080 0.0724588268 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_003683_020 0.0725319617 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_105328_020 0.0734974677 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
20 Hb_000836_460 0.0744384473 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_290 Hb_000140_290 Hb_005634_010 Hb_005634_010 Hb_000140_290--Hb_005634_010 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_000556_120 Hb_000556_120 Hb_000140_290--Hb_000556_120 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090 Hb_005634_010--Hb_000556_120 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_010142_020--Hb_001500_140 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_000556_120--Hb_000329_060 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_001584_120 Hb_001584_120 Hb_001500_140--Hb_001584_120 Hb_001500_140--Hb_093458_040 Hb_001999_310 Hb_001999_310 Hb_001500_140--Hb_001999_310 Hb_000574_450 Hb_000574_450 Hb_001500_140--Hb_000574_450 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_093458_040--Hb_002989_020 Hb_000340_530 Hb_000340_530 Hb_093458_040--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.04648 6.50888 7.17482 11.1721 5.90426 6.81832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.64743 6.25883 7.49187 10.3548 7.9362

CAGE analysis