Hb_000140_360

Information

Type -
Description -
Location Contig140: 349828-357990
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000692mg
description hypothetical protein
nr
ID XP_012083283.1
description PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14313 PE=4 SV=1
Gene Ontology
ID GO:0005768
description glycosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10860: 350686-353328 , PASA_asmbl_10861: 353375-355110 , PASA_asmbl_10862: 355270-357723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_360 0.0 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
2 Hb_001102_210 0.1273253499 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
3 Hb_002078_440 0.1306957354 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
4 Hb_000997_190 0.130906084 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
5 Hb_002026_120 0.1490499916 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
6 Hb_117807_010 0.1492795961 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
7 Hb_000815_290 0.1539122153 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
8 Hb_007037_020 0.1552860542 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
9 Hb_000111_450 0.1576865765 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
10 Hb_000130_110 0.1587058839 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
11 Hb_003783_030 0.160633705 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
12 Hb_013405_140 0.1611298898 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
13 Hb_000059_010 0.1650124985 - - amino acid binding protein, putative [Ricinus communis]
14 Hb_000340_310 0.1681695725 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
15 Hb_001172_120 0.1688676391 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
16 Hb_006738_030 0.1697477048 - - Ras-related protein Rab7 [Morus notabilis]
17 Hb_000530_070 0.1706695769 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
18 Hb_011021_040 0.1723873543 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
19 Hb_001123_100 0.1728715095 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
20 Hb_005054_260 0.1749953726 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_000140_360 Hb_000140_360 Hb_001102_210 Hb_001102_210 Hb_000140_360--Hb_001102_210 Hb_002078_440 Hb_002078_440 Hb_000140_360--Hb_002078_440 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_002026_120 Hb_002026_120 Hb_000140_360--Hb_002026_120 Hb_117807_010 Hb_117807_010 Hb_000140_360--Hb_117807_010 Hb_000815_290 Hb_000815_290 Hb_000140_360--Hb_000815_290 Hb_001102_210--Hb_002078_440 Hb_013405_140 Hb_013405_140 Hb_001102_210--Hb_013405_140 Hb_000059_010 Hb_000059_010 Hb_001102_210--Hb_000059_010 Hb_000340_310 Hb_000340_310 Hb_001102_210--Hb_000340_310 Hb_001102_210--Hb_000815_290 Hb_002078_440--Hb_013405_140 Hb_003783_030 Hb_003783_030 Hb_002078_440--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_002078_440--Hb_011021_040 Hb_002078_440--Hb_000340_310 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_006006_050 Hb_006006_050 Hb_000997_190--Hb_006006_050 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_006478_160 Hb_006478_160 Hb_000997_190--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000997_190--Hb_000567_410 Hb_002231_030 Hb_002231_030 Hb_000997_190--Hb_002231_030 Hb_000928_130 Hb_000928_130 Hb_002026_120--Hb_000928_130 Hb_000096_150 Hb_000096_150 Hb_002026_120--Hb_000096_150 Hb_023344_050 Hb_023344_050 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_000318_160 Hb_000318_160 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040 Hb_000170_120 Hb_000170_120 Hb_117807_010--Hb_000170_120 Hb_012163_020 Hb_012163_020 Hb_117807_010--Hb_012163_020 Hb_117807_010--Hb_000815_290 Hb_117807_010--Hb_000340_310 Hb_117807_010--Hb_002026_120 Hb_000771_060 Hb_000771_060 Hb_000815_290--Hb_000771_060 Hb_000815_290--Hb_000059_010 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_130719_010 Hb_130719_010 Hb_000815_290--Hb_130719_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.926753 2.26628 3.37467 2.60925 1.0448 0.580621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5932 14.1969 14.1148 4.3434 3.79584

CAGE analysis