Hb_000140_380

Information

Type -
Description -
Location Contig140: 371753-374947
Sequence    

Annotation

kegg
ID rcu:RCOM_1617250
description Protein UNUSUAL FLORAL ORGANS, putative
nr
ID XP_012083278.1
description PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
swissprot
ID Q9M310
description F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1
trembl
ID A0A067JXC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14308 PE=4 SV=1
Gene Ontology
ID GO:0019005
description f-box kelch-repeat protein at3g61590

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10870: 371990-373957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_380 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
2 Hb_000252_100 0.0694803675 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
3 Hb_004078_040 0.070399598 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
4 Hb_000787_020 0.0739573875 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000173_410 0.0761858096 - - PREDICTED: BI1-like protein [Jatropha curcas]
6 Hb_000890_150 0.0783612857 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
7 Hb_000454_090 0.0793088346 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
8 Hb_000212_450 0.0795390961 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
9 Hb_000505_150 0.0799626608 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
10 Hb_000359_060 0.0800544871 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
11 Hb_001898_080 0.0870383436 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
12 Hb_001377_260 0.0887199888 - - protein with unknown function [Ricinus communis]
13 Hb_000220_100 0.0889543166 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
14 Hb_000521_130 0.0898914606 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
15 Hb_007416_090 0.093191665 - - UDP-sugar transporter, putative [Ricinus communis]
16 Hb_005051_020 0.0943305371 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
17 Hb_033594_080 0.095878931 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
18 Hb_004109_220 0.0960207921 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
19 Hb_149985_010 0.0985184121 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
20 Hb_000608_050 0.0997377245 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_380 Hb_000140_380 Hb_000252_100 Hb_000252_100 Hb_000140_380--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000173_410 Hb_000173_410 Hb_000140_380--Hb_000173_410 Hb_000890_150 Hb_000890_150 Hb_000140_380--Hb_000890_150 Hb_000454_090 Hb_000454_090 Hb_000140_380--Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_000359_060 Hb_000359_060 Hb_004078_040--Hb_000359_060 Hb_000393_020 Hb_000393_020 Hb_004078_040--Hb_000393_020 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_004078_040--Hb_000454_090 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070 Hb_084646_010 Hb_084646_010 Hb_000787_020--Hb_084646_010 Hb_000787_020--Hb_000890_150 Hb_000483_260 Hb_000483_260 Hb_000787_020--Hb_000483_260 Hb_155159_020 Hb_155159_020 Hb_000787_020--Hb_155159_020 Hb_000049_210 Hb_000049_210 Hb_000787_020--Hb_000049_210 Hb_000173_410--Hb_000454_090 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000173_410--Hb_000359_060 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000890_150--Hb_000049_210 Hb_000890_150--Hb_004078_040 Hb_000454_090--Hb_000220_100 Hb_000454_090--Hb_000393_020 Hb_000454_090--Hb_005765_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.388 6.37416 4.54373 13.5166 3.78947 4.35392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28036 8.59497 12.4058 6.57765 5.42805

CAGE analysis