Hb_000140_410

Information

Type -
Description -
Location Contig140: 383850-387735
Sequence    

Annotation

kegg
ID rcu:RCOM_1617270
description hypothetical protein
nr
ID XP_012083276.1
description PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID A0A067JX41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10872: 384344-385522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_410 0.0 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
2 Hb_001269_690 0.1081104244 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008066_070 0.1230369522 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
4 Hb_020805_170 0.124173052 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_000905_170 0.1309550816 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_001529_050 0.1523932313 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
7 Hb_003623_070 0.1542486235 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_002273_050 0.1601986815 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
9 Hb_000086_660 0.160230452 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
10 Hb_011930_070 0.1620751408 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
11 Hb_000227_060 0.1650013282 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
12 Hb_001104_240 0.1671540777 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_002301_380 0.1679712741 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
14 Hb_006586_030 0.1749705236 - - PREDICTED: transcription factor LHW isoform X1 [Jatropha curcas]
15 Hb_000390_100 0.1750755164 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
16 Hb_002273_080 0.1758621151 - - geranylgeranyl reductase [Monoraphidium neglectum]
17 Hb_002827_020 0.1765445511 - - PREDICTED: plant intracellular Ras-group-related LRR protein 5-like [Jatropha curcas]
18 Hb_000215_410 0.1773466657 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
19 Hb_000856_180 0.1791435173 - - calcium-dependent protein kinase [Hevea brasiliensis]
20 Hb_001433_180 0.1802577735 - - hypothetical protein JCGZ_23261 [Jatropha curcas]

Gene co-expression network

sample Hb_000140_410 Hb_000140_410 Hb_001269_690 Hb_001269_690 Hb_000140_410--Hb_001269_690 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_001529_050 Hb_001529_050 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001269_690--Hb_001529_050 Hb_002273_050 Hb_002273_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001104_240 Hb_001104_240 Hb_001269_690--Hb_001104_240 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_001114_070 Hb_001114_070 Hb_020805_170--Hb_001114_070 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_020805_170--Hb_000905_170 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_001529_050--Hb_001104_240 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_001529_050--Hb_003623_070 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_003623_070--Hb_001269_690 Hb_004788_040 Hb_004788_040 Hb_003623_070--Hb_004788_040 Hb_001635_050 Hb_001635_050 Hb_003623_070--Hb_001635_050 Hb_003623_070--Hb_002273_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6967 11.4794 0.910833 2.71077 1.43407 2.95727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94396 2.56736 2.5005 10.9085 0.344556

CAGE analysis