Hb_000140_490

Information

Type -
Description -
Location Contig140: 489354-489786
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDY50088.1
description BnaC01g32630D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078IM37
description BnaC01g32630D protein OS=Brassica napus GN=BnaC01g32630D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_490 0.0 - - BnaC01g32630D [Brassica napus]
2 Hb_001266_140 0.1357660867 - - PREDICTED: protein RER1B [Jatropha curcas]
3 Hb_152453_010 0.1435839583 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
4 Hb_000365_160 0.144268984 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
5 Hb_012132_040 0.1478994318 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
6 Hb_000198_070 0.1539395904 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
7 Hb_000009_650 0.1570081498 - - PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Jatropha curcas]
8 Hb_022693_030 0.1573595628 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
9 Hb_005085_020 0.1609957966 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
10 Hb_002831_040 0.1649863674 - - PREDICTED: fatty acid amide hydrolase-like [Jatropha curcas]
11 Hb_000976_080 0.1690239559 - - hypothetical protein VITISV_034376 [Vitis vinifera]
12 Hb_008246_030 0.1694118532 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
13 Hb_002708_020 0.1696477416 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
14 Hb_000392_050 0.1702165744 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
15 Hb_000199_080 0.1717227754 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000160_150 0.172477243 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
17 Hb_135377_010 0.1727971153 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
18 Hb_000567_360 0.1750513813 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
19 Hb_008556_030 0.1753808764 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
20 Hb_005846_020 0.175461563 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]

Gene co-expression network

sample Hb_000140_490 Hb_000140_490 Hb_001266_140 Hb_001266_140 Hb_000140_490--Hb_001266_140 Hb_152453_010 Hb_152453_010 Hb_000140_490--Hb_152453_010 Hb_000365_160 Hb_000365_160 Hb_000140_490--Hb_000365_160 Hb_012132_040 Hb_012132_040 Hb_000140_490--Hb_012132_040 Hb_000198_070 Hb_000198_070 Hb_000140_490--Hb_000198_070 Hb_000009_650 Hb_000009_650 Hb_000140_490--Hb_000009_650 Hb_030827_030 Hb_030827_030 Hb_001266_140--Hb_030827_030 Hb_008556_030 Hb_008556_030 Hb_001266_140--Hb_008556_030 Hb_000567_360 Hb_000567_360 Hb_001266_140--Hb_000567_360 Hb_000797_050 Hb_000797_050 Hb_001266_140--Hb_000797_050 Hb_002681_170 Hb_002681_170 Hb_001266_140--Hb_002681_170 Hb_022693_030 Hb_022693_030 Hb_001266_140--Hb_022693_030 Hb_005846_020 Hb_005846_020 Hb_152453_010--Hb_005846_020 Hb_000976_080 Hb_000976_080 Hb_152453_010--Hb_000976_080 Hb_001910_020 Hb_001910_020 Hb_152453_010--Hb_001910_020 Hb_000345_530 Hb_000345_530 Hb_152453_010--Hb_000345_530 Hb_000617_220 Hb_000617_220 Hb_152453_010--Hb_000617_220 Hb_000392_050 Hb_000392_050 Hb_152453_010--Hb_000392_050 Hb_004920_060 Hb_004920_060 Hb_000365_160--Hb_004920_060 Hb_000365_160--Hb_001910_020 Hb_002307_350 Hb_002307_350 Hb_000365_160--Hb_002307_350 Hb_008246_030 Hb_008246_030 Hb_000365_160--Hb_008246_030 Hb_002411_180 Hb_002411_180 Hb_000365_160--Hb_002411_180 Hb_005408_020 Hb_005408_020 Hb_000365_160--Hb_005408_020 Hb_007668_040 Hb_007668_040 Hb_012132_040--Hb_007668_040 Hb_001341_050 Hb_001341_050 Hb_012132_040--Hb_001341_050 Hb_000364_060 Hb_000364_060 Hb_012132_040--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_032496_030 Hb_032496_030 Hb_012132_040--Hb_032496_030 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090 Hb_002737_070 Hb_002737_070 Hb_000009_650--Hb_002737_070 Hb_002918_030 Hb_002918_030 Hb_000009_650--Hb_002918_030 Hb_011671_090 Hb_011671_090 Hb_000009_650--Hb_011671_090 Hb_000062_430 Hb_000062_430 Hb_000009_650--Hb_000062_430 Hb_001433_070 Hb_001433_070 Hb_000009_650--Hb_001433_070 Hb_000913_050 Hb_000913_050 Hb_000009_650--Hb_000913_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74712 1.39033 5.98695 2.37181 6.86442 10.9285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61107 3.04201 0.37169 1.97374 2.4292

CAGE analysis