Hb_000141_020

Information

Type transcription factor
Description TF Family: GRAS
Location Contig141: 31619-32494
Sequence    

Annotation

kegg
ID pxb:103935017
description scarecrow-like protein 6
nr
ID XP_009343062.1
description PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
swissprot
ID O81316
description Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1
trembl
ID M5WE33
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001561mg PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_020 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
2 Hb_003504_020 0.0934443974 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
3 Hb_000125_030 0.0946710961 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
4 Hb_000406_120 0.0950053915 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_000099_130 0.100677223 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
6 Hb_001956_070 0.1034703367 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
7 Hb_001159_080 0.1062145571 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
8 Hb_010407_180 0.10692288 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
9 Hb_017987_060 0.1090896859 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
10 Hb_003581_260 0.1119895917 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
11 Hb_005569_020 0.1152442705 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001279_340 0.121673957 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
13 Hb_000196_080 0.1228708154 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
14 Hb_000802_100 0.1233051345 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
15 Hb_021409_160 0.1236100759 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
16 Hb_003582_040 0.124034694 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
17 Hb_002045_180 0.124532148 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
18 Hb_001096_110 0.1251173811 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
19 Hb_000905_200 0.1267165537 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
20 Hb_020301_040 0.1274775696 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]

Gene co-expression network

sample Hb_000141_020 Hb_000141_020 Hb_003504_020 Hb_003504_020 Hb_000141_020--Hb_003504_020 Hb_000125_030 Hb_000125_030 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001956_070 Hb_001956_070 Hb_000141_020--Hb_001956_070 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_003504_020--Hb_000125_030 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_003642_050 Hb_003642_050 Hb_000125_030--Hb_003642_050 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_002045_180 Hb_002045_180 Hb_000406_120--Hb_002045_180 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_000406_120--Hb_010407_180 Hb_000406_120--Hb_002056_060 Hb_001135_210 Hb_001135_210 Hb_000099_130--Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_000099_130--Hb_001232_140 Hb_000099_130--Hb_001159_080 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030 Hb_017987_060 Hb_017987_060 Hb_001956_070--Hb_017987_060 Hb_000110_320 Hb_000110_320 Hb_001956_070--Hb_000110_320 Hb_001956_070--Hb_003579_030 Hb_001616_030 Hb_001616_030 Hb_001956_070--Hb_001616_030 Hb_001956_070--Hb_000125_030 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4177 23.1225 18.3892 20.986 11.5314 17.6765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.2366 70.4587 103.274 13.9612 9.63652

CAGE analysis