Hb_000141_040

Information

Type -
Description -
Location Contig141: 54181-56838
Sequence    

Annotation

kegg
ID rcu:RCOM_0541040
description gaba(A) receptor-associated protein, putative
nr
ID XP_006440335.1
description hypothetical protein CICLE_v10022858mg [Citrus clementina]
swissprot
ID Q8VYK7
description Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1
trembl
ID A0A067F249
description Autophagy-related protein OS=Citrus sinensis GN=CISIN_1g033114mg PE=3 SV=1
Gene Ontology
ID GO:0006914
description autophagy-related protein 8f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11079: 53990-56832 , PASA_asmbl_11080: 54088-56826 , PASA_asmbl_11081: 55578-56074
cDNA
(Sanger)
(ID:Location)		 044_E05.ab1: 54027-56830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_040 0.0 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
2 Hb_145880_030 0.0684623999 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
3 Hb_002007_060 0.0788519516 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
4 Hb_000395_290 0.079391273 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
5 Hb_003363_110 0.0804790938 - - protein with unknown function [Ricinus communis]
6 Hb_000866_270 0.0814521133 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
7 Hb_003078_040 0.0833725515 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
8 Hb_023226_040 0.0839751161 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
9 Hb_000220_130 0.0854679643 - - Phosphatidyl serine synthase family protein isoform 1 [Theobroma cacao]
10 Hb_001662_070 0.0855192324 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
11 Hb_135545_010 0.0871752801 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_000251_070 0.0891380321 - - hypothetical protein L484_010641 [Morus notabilis]
13 Hb_002188_130 0.0913413947 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
14 Hb_005186_050 0.0917040108 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
15 Hb_165132_010 0.0945799693 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
16 Hb_002685_040 0.0946540091 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
17 Hb_002301_140 0.0954157384 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
18 Hb_001269_680 0.0956186536 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
19 Hb_005000_210 0.095619864 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
20 Hb_000000_160 0.0964933225 - - PREDICTED: membrin-11 [Jatropha curcas]

Gene co-expression network

sample Hb_000141_040 Hb_000141_040 Hb_145880_030 Hb_145880_030 Hb_000141_040--Hb_145880_030 Hb_002007_060 Hb_002007_060 Hb_000141_040--Hb_002007_060 Hb_000395_290 Hb_000395_290 Hb_000141_040--Hb_000395_290 Hb_003363_110 Hb_003363_110 Hb_000141_040--Hb_003363_110 Hb_000866_270 Hb_000866_270 Hb_000141_040--Hb_000866_270 Hb_003078_040 Hb_003078_040 Hb_000141_040--Hb_003078_040 Hb_010407_040 Hb_010407_040 Hb_145880_030--Hb_010407_040 Hb_007778_030 Hb_007778_030 Hb_145880_030--Hb_007778_030 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_017469_020 Hb_017469_020 Hb_000395_290--Hb_017469_020 Hb_002868_010 Hb_002868_010 Hb_000395_290--Hb_002868_010 Hb_004453_170 Hb_004453_170 Hb_000395_290--Hb_004453_170 Hb_000096_170 Hb_000096_170 Hb_000395_290--Hb_000096_170 Hb_002234_140 Hb_002234_140 Hb_000395_290--Hb_002234_140 Hb_000494_020 Hb_000494_020 Hb_003363_110--Hb_000494_020 Hb_028841_030 Hb_028841_030 Hb_003363_110--Hb_028841_030 Hb_003363_110--Hb_010407_040 Hb_002233_150 Hb_002233_150 Hb_003363_110--Hb_002233_150 Hb_005186_050 Hb_005186_050 Hb_003363_110--Hb_005186_050 Hb_003363_110--Hb_145880_030 Hb_000866_270--Hb_001259_090 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_028995_040 Hb_028995_040 Hb_000866_270--Hb_028995_040 Hb_000661_250 Hb_000661_250 Hb_000866_270--Hb_000661_250 Hb_003078_040--Hb_028995_040 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_003687_230 Hb_003687_230 Hb_003078_040--Hb_003687_230 Hb_003078_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
174.359 68.4106 80.1264 77.6559 110.896 84.5252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.097 196.088 101.967 32.115 30.8697

CAGE analysis