Hb_000141_060

Information

Type -
Description -
Location Contig141: 72409-78416
Sequence    

Annotation

kegg
ID rcu:RCOM_0540820
description hypothetical protein
nr
ID XP_012069953.1
description PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03383 PE=4 SV=1
Gene Ontology
ID GO:0002161
description prolyl-trna synthetase-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11083: 72700-78339 , PASA_asmbl_11084: 73485-73828 , PASA_asmbl_11085: 72911-73102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_060 0.0 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
2 Hb_000666_110 0.063884382 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
3 Hb_143629_010 0.0686706844 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_019962_030 0.073219285 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
5 Hb_171900_100 0.0829945701 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
6 Hb_011794_090 0.0844789886 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
7 Hb_143766_090 0.0845528943 - - 60S ribosomal protein L31B [Hevea brasiliensis]
8 Hb_010128_130 0.0848900604 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
9 Hb_005503_030 0.0857854359 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
10 Hb_000107_050 0.085831719 - - 60S ribosomal protein L9, putative [Ricinus communis]
11 Hb_001741_140 0.0864739731 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
12 Hb_008887_050 0.0864760355 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
13 Hb_004204_070 0.0865003634 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
14 Hb_000905_190 0.0878831979 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
15 Hb_005535_050 0.0898297681 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
16 Hb_002272_250 0.0901954567 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000205_120 0.0905464078 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
18 Hb_000976_270 0.0908017724 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
19 Hb_000000_080 0.0910177601 - - lipoate-protein ligase B, putative [Ricinus communis]
20 Hb_005527_050 0.0917045764 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]

Gene co-expression network

sample Hb_000141_060 Hb_000141_060 Hb_000666_110 Hb_000666_110 Hb_000141_060--Hb_000666_110 Hb_143629_010 Hb_143629_010 Hb_000141_060--Hb_143629_010 Hb_019962_030 Hb_019962_030 Hb_000141_060--Hb_019962_030 Hb_171900_100 Hb_171900_100 Hb_000141_060--Hb_171900_100 Hb_011794_090 Hb_011794_090 Hb_000141_060--Hb_011794_090 Hb_143766_090 Hb_143766_090 Hb_000141_060--Hb_143766_090 Hb_001504_150 Hb_001504_150 Hb_000666_110--Hb_001504_150 Hb_000666_110--Hb_019962_030 Hb_000538_020 Hb_000538_020 Hb_000666_110--Hb_000538_020 Hb_000905_190 Hb_000905_190 Hb_000666_110--Hb_000905_190 Hb_005503_030 Hb_005503_030 Hb_000666_110--Hb_005503_030 Hb_008887_050 Hb_008887_050 Hb_143629_010--Hb_008887_050 Hb_001741_140 Hb_001741_140 Hb_143629_010--Hb_001741_140 Hb_143629_010--Hb_005503_030 Hb_143629_010--Hb_171900_100 Hb_031939_010 Hb_031939_010 Hb_143629_010--Hb_031939_010 Hb_007007_050 Hb_007007_050 Hb_019962_030--Hb_007007_050 Hb_005535_050 Hb_005535_050 Hb_019962_030--Hb_005535_050 Hb_004722_060 Hb_004722_060 Hb_019962_030--Hb_004722_060 Hb_001898_230 Hb_001898_230 Hb_019962_030--Hb_001898_230 Hb_019962_030--Hb_001504_150 Hb_004195_280 Hb_004195_280 Hb_171900_100--Hb_004195_280 Hb_171900_100--Hb_031939_010 Hb_171900_100--Hb_008887_050 Hb_000236_320 Hb_000236_320 Hb_171900_100--Hb_000236_320 Hb_002007_350 Hb_002007_350 Hb_171900_100--Hb_002007_350 Hb_003688_100 Hb_003688_100 Hb_011794_090--Hb_003688_100 Hb_004204_070 Hb_004204_070 Hb_011794_090--Hb_004204_070 Hb_002272_250 Hb_002272_250 Hb_011794_090--Hb_002272_250 Hb_000107_050 Hb_000107_050 Hb_011794_090--Hb_000107_050 Hb_011794_090--Hb_004722_060 Hb_000977_130 Hb_000977_130 Hb_011794_090--Hb_000977_130 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_143766_090--Hb_003688_100 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.8043 15.6938 25.5291 8.7655 52.6326 50.3421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.8974 41.7416 26.581 19.0917 7.14048

CAGE analysis