Hb_000141_070

Information

Type -
Description -
Location Contig141: 92969-94412
Sequence    

Annotation

kegg
ID rcu:RCOM_0540790
description l-lactate dehydrogenase, putative (EC:1.1.1.27)
nr
ID XP_002525902.1
description l-lactate dehydrogenase, putative [Ricinus communis]
swissprot
ID P22989
description L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1
trembl
ID B9SIT3
description L-lactate dehydrogenase OS=Ricinus communis GN=RCOM_0540790 PE=3 SV=1
Gene Ontology
ID GO:0005829
description l-lactate dehydrogenase b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11087: 92919-94397
cDNA
(Sanger)
(ID:Location)		 053_L10.ab1: 92926-93715

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_070 0.0 - - l-lactate dehydrogenase, putative [Ricinus communis]
2 Hb_003334_080 0.0287676345 - - Reticuline oxidase precursor, putative [Ricinus communis]
3 Hb_058620_050 0.0428199001 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_009568_010 0.0428354775 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
5 Hb_007483_040 0.0444635475 - - PREDICTED: protein SRG1-like [Jatropha curcas]
6 Hb_058620_040 0.044517023 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
7 Hb_001456_040 0.0516338566 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
8 Hb_002553_170 0.0544195407 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
9 Hb_000712_070 0.0556679843 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004693_010 0.0580678195 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
11 Hb_020480_050 0.0608278143 - - putative wall-associated kinase family protein [Populus trichocarpa]
12 Hb_000446_100 0.0638513243 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_002835_020 0.0639407205 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
14 Hb_001930_060 0.0672801605 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
15 Hb_000500_190 0.0677014224 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
16 Hb_001040_190 0.0718794448 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
17 Hb_005120_010 0.073273901 - - amino acid transporter, putative [Ricinus communis]
18 Hb_001301_020 0.0737309506 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
19 Hb_003090_070 0.0752799859 - - PREDICTED: laccase-7 [Jatropha curcas]
20 Hb_010697_030 0.0770437743 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000141_070 Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_009568_010 Hb_009568_010 Hb_000141_070--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_000141_070--Hb_007483_040 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_001456_040 Hb_001456_040 Hb_000141_070--Hb_001456_040 Hb_003334_080--Hb_058620_040 Hb_003334_080--Hb_009568_010 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_003334_080--Hb_058620_050 Hb_058620_050--Hb_058620_040 Hb_004693_010 Hb_004693_010 Hb_058620_050--Hb_004693_010 Hb_058620_050--Hb_009568_010 Hb_058620_050--Hb_007483_040 Hb_009568_010--Hb_007483_040 Hb_000446_100 Hb_000446_100 Hb_009568_010--Hb_000446_100 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050 Hb_010697_030 Hb_010697_030 Hb_007483_040--Hb_010697_030 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_003334_080 Hb_000712_070 Hb_000712_070 Hb_007483_040--Hb_000712_070 Hb_058620_040--Hb_004693_010 Hb_006925_010 Hb_006925_010 Hb_058620_040--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_058620_040--Hb_000086_710 Hb_001456_040--Hb_020480_050 Hb_001456_040--Hb_000446_100 Hb_000500_190 Hb_000500_190 Hb_001456_040--Hb_000500_190 Hb_004254_070 Hb_004254_070 Hb_001456_040--Hb_004254_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.563025 0.885441 0.843389 0 0.0158297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0277876 0 46.3137 0.115715

CAGE analysis