Hb_000141_240

Information

Type -
Description -
Location Contig141: 349491-354020
Sequence    

Annotation

kegg
ID rcu:RCOM_0250440
description oligopeptide transporter, putative
nr
ID XP_012087157.1
description PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
swissprot
ID Q05085
description Protein NRT1/ PTR FAMILY 6.3 OS=Arabidopsis thaliana GN=NPF6.3 PE=1 SV=1
trembl
ID A0A067JS35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20799 PE=3 SV=1
Gene Ontology
ID GO:0005886
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_240 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
2 Hb_100873_030 0.1501598137 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
3 Hb_018954_010 0.2024772501 - - -
4 Hb_000172_570 0.2113116088 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
5 Hb_002073_120 0.2128764519 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
6 Hb_000009_070 0.2163861012 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
7 Hb_000995_070 0.2211429535 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
8 Hb_154340_010 0.223241744 - - truncated nitrate transporter [Fragaria vesca]
9 Hb_010417_010 0.2239951183 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_042223_010 0.2247841787 - - Protein Z, putative [Ricinus communis]
11 Hb_156473_010 0.225805145 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
12 Hb_088538_020 0.2298946208 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
13 Hb_000083_040 0.2322836218 - - conserved hypothetical protein [Ricinus communis]
14 Hb_074238_010 0.2500727222 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
15 Hb_001534_170 0.2502054694 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
16 Hb_001799_080 0.2558909653 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
17 Hb_023732_040 0.2561418821 - - cytochrome P450, putative [Ricinus communis]
18 Hb_002522_020 0.2564701488 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
19 Hb_000972_010 0.2571951334 - - PREDICTED: kinesin KP1 [Jatropha curcas]
20 Hb_001114_340 0.262653593 - - hypothetical protein JCGZ_13805 [Jatropha curcas]

Gene co-expression network

sample Hb_000141_240 Hb_000141_240 Hb_100873_030 Hb_100873_030 Hb_000141_240--Hb_100873_030 Hb_018954_010 Hb_018954_010 Hb_000141_240--Hb_018954_010 Hb_000172_570 Hb_000172_570 Hb_000141_240--Hb_000172_570 Hb_002073_120 Hb_002073_120 Hb_000141_240--Hb_002073_120 Hb_000009_070 Hb_000009_070 Hb_000141_240--Hb_000009_070 Hb_000995_070 Hb_000995_070 Hb_000141_240--Hb_000995_070 Hb_100873_030--Hb_000995_070 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_100873_030--Hb_000009_070 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_001534_170 Hb_001534_170 Hb_018954_010--Hb_001534_170 Hb_017124_020 Hb_017124_020 Hb_018954_010--Hb_017124_020 Hb_018954_010--Hb_000995_070 Hb_000172_570--Hb_002073_120 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000141_030 Hb_000141_030 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000172_570--Hb_000995_070 Hb_000784_040 Hb_000784_040 Hb_000172_570--Hb_000784_040 Hb_010417_010 Hb_010417_010 Hb_002073_120--Hb_010417_010 Hb_002073_120--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_002073_120--Hb_004208_100 Hb_002073_120--Hb_000009_070 Hb_000009_070--Hb_010417_010 Hb_000083_040 Hb_000083_040 Hb_000009_070--Hb_000083_040 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000995_070--Hb_000784_040 Hb_000995_070--Hb_010417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50099 0.185266 0.0109655 0.297195 0.542279 0.346944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11788 2.02739 31.1584 1.10923 0

CAGE analysis