Hb_000142_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig142: 10287-12140
Sequence    

Annotation

kegg
ID rcu:RCOM_0129350
description NAC domain-containing protein, putative
nr
ID XP_002532683.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T364
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0129350 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11226: 11202-11968 , PASA_asmbl_11227: 11999-12246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000142_020 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_038758_010 0.0656437185 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_002217_440 0.1711258177 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000877_090 0.1804410557 - - allergenic-related protein Pt2L4 [Manihot esculenta]
5 Hb_004488_010 0.1868479728 - - hypothetical protein CISIN_1g019168mg [Citrus sinensis]
6 Hb_000625_110 0.1884599011 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
7 Hb_001810_010 0.1964704256 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
8 Hb_003100_010 0.2011045573 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
9 Hb_008616_060 0.2120008255 - - syntaxin, putative [Ricinus communis]
10 Hb_000977_160 0.2142604358 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
11 Hb_006198_170 0.2148113052 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
12 Hb_012055_100 0.2227263527 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
13 Hb_005396_100 0.2259714411 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002417_030 0.2275874067 - - PREDICTED: purine permease 3-like [Jatropha curcas]
15 Hb_002067_110 0.2293564924 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
16 Hb_002019_040 0.2317384876 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
17 Hb_083270_010 0.2355246393 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
18 Hb_000260_320 0.2356666025 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
19 Hb_001363_010 0.2360603771 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
20 Hb_188168_010 0.2370110305 - - Arylacetamide deacetylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000142_020 Hb_000142_020 Hb_038758_010 Hb_038758_010 Hb_000142_020--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000142_020--Hb_002217_440 Hb_000877_090 Hb_000877_090 Hb_000142_020--Hb_000877_090 Hb_004488_010 Hb_004488_010 Hb_000142_020--Hb_004488_010 Hb_000625_110 Hb_000625_110 Hb_000142_020--Hb_000625_110 Hb_001810_010 Hb_001810_010 Hb_000142_020--Hb_001810_010 Hb_038758_010--Hb_000877_090 Hb_038758_010--Hb_002217_440 Hb_038758_010--Hb_000625_110 Hb_038758_010--Hb_001810_010 Hb_012055_100 Hb_012055_100 Hb_038758_010--Hb_012055_100 Hb_013057_030 Hb_013057_030 Hb_002217_440--Hb_013057_030 Hb_002217_440--Hb_001810_010 Hb_048653_020 Hb_048653_020 Hb_002217_440--Hb_048653_020 Hb_000417_290 Hb_000417_290 Hb_002217_440--Hb_000417_290 Hb_008616_060 Hb_008616_060 Hb_002217_440--Hb_008616_060 Hb_048653_040 Hb_048653_040 Hb_002217_440--Hb_048653_040 Hb_000260_320 Hb_000260_320 Hb_000877_090--Hb_000260_320 Hb_000877_090--Hb_012055_100 Hb_002019_030 Hb_002019_030 Hb_000877_090--Hb_002019_030 Hb_003376_340 Hb_003376_340 Hb_000877_090--Hb_003376_340 Hb_000532_060 Hb_000532_060 Hb_000877_090--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000877_090--Hb_046117_050 Hb_004488_010--Hb_000877_090 Hb_005588_020 Hb_005588_020 Hb_004488_010--Hb_005588_020 Hb_004488_010--Hb_038758_010 Hb_000977_160 Hb_000977_160 Hb_004488_010--Hb_000977_160 Hb_066262_020 Hb_066262_020 Hb_004488_010--Hb_066262_020 Hb_002417_030 Hb_002417_030 Hb_000625_110--Hb_002417_030 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_012268_010 Hb_012268_010 Hb_001810_010--Hb_012268_010 Hb_000940_020 Hb_000940_020 Hb_001810_010--Hb_000940_020 Hb_005396_100 Hb_005396_100 Hb_001810_010--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_001810_010--Hb_001363_010 Hb_000345_190 Hb_000345_190 Hb_001810_010--Hb_000345_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.535251 29.7677 0.0165296 0.223327 0.361878 0.175245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81981 1.39152 0.365945 9.4167 0.162692

CAGE analysis