Hb_000142_050

Information

Type -
Description -
Location Contig142: 140556-144681
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41440g
description hypothetical protein
nr
ID XP_011042496.1
description PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
swissprot
ID Q7XSK0
description Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=3 SV=2
trembl
ID U5GVY1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41440g PE=3 SV=1
Gene Ontology
ID GO:0008422
description beta-glucosidase 18-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11229: 140564-140689 , PASA_asmbl_11230: 140869-141828 , PASA_asmbl_11231: 141850-144663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000142_050 0.0 - - PREDICTED: beta-glucosidase 18-like isoform X1 [Populus euphratica]
2 Hb_000018_110 0.0482901741 - - hypothetical protein POPTR_0018s00370g [Populus trichocarpa]
3 Hb_145502_010 0.0504609083 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82-like [Jatropha curcas]
4 Hb_002245_050 0.0542072221 - - Oxygen-evolving enhancer protein 3-1, chloroplast precursor, putative [Ricinus communis]
5 Hb_009692_050 0.0557876862 - - -
6 Hb_000174_120 0.056564974 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_001433_210 0.056986733 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
8 Hb_002284_290 0.0576555703 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
9 Hb_147976_010 0.0577631251 - - -
10 Hb_031862_210 0.0580922455 - - hypothetical protein JCGZ_24955 [Jatropha curcas]
11 Hb_000821_030 0.0637868107 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-2 [Jatropha curcas]
12 Hb_003598_070 0.0647113002 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001205_140 0.0653760568 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
14 Hb_000414_040 0.0658066018 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
15 Hb_000262_090 0.066384223 - - Root phototropism protein, putative [Ricinus communis]
16 Hb_000635_240 0.0664018087 - - chlorophyll a/b-binding protein type II precursor [Populus trichocarpa]
17 Hb_000836_620 0.0666177471 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
18 Hb_002929_030 0.0673665605 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
19 Hb_001546_140 0.0677436897 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
20 Hb_003836_040 0.0722232063 - - PREDICTED: cytochrome P450 77A3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000142_050 Hb_000142_050 Hb_000018_110 Hb_000018_110 Hb_000142_050--Hb_000018_110 Hb_145502_010 Hb_145502_010 Hb_000142_050--Hb_145502_010 Hb_002245_050 Hb_002245_050 Hb_000142_050--Hb_002245_050 Hb_009692_050 Hb_009692_050 Hb_000142_050--Hb_009692_050 Hb_000174_120 Hb_000174_120 Hb_000142_050--Hb_000174_120 Hb_001433_210 Hb_001433_210 Hb_000142_050--Hb_001433_210 Hb_000018_110--Hb_145502_010 Hb_147976_010 Hb_147976_010 Hb_000018_110--Hb_147976_010 Hb_001205_140 Hb_001205_140 Hb_000018_110--Hb_001205_140 Hb_000018_110--Hb_002245_050 Hb_003598_070 Hb_003598_070 Hb_000018_110--Hb_003598_070 Hb_031862_210 Hb_031862_210 Hb_145502_010--Hb_031862_210 Hb_145502_010--Hb_147976_010 Hb_145502_010--Hb_003598_070 Hb_145502_010--Hb_009692_050 Hb_145502_010--Hb_001205_140 Hb_000635_240 Hb_000635_240 Hb_002245_050--Hb_000635_240 Hb_000821_030 Hb_000821_030 Hb_002245_050--Hb_000821_030 Hb_002245_050--Hb_001433_210 Hb_002929_030 Hb_002929_030 Hb_002245_050--Hb_002929_030 Hb_009692_050--Hb_147976_010 Hb_009692_050--Hb_003598_070 Hb_002284_290 Hb_002284_290 Hb_009692_050--Hb_002284_290 Hb_009692_050--Hb_001433_210 Hb_009692_050--Hb_000174_120 Hb_000414_040 Hb_000414_040 Hb_009692_050--Hb_000414_040 Hb_000174_120--Hb_000414_040 Hb_005797_020 Hb_005797_020 Hb_000174_120--Hb_005797_020 Hb_003836_040 Hb_003836_040 Hb_000174_120--Hb_003836_040 Hb_000174_120--Hb_002284_290 Hb_003605_170 Hb_003605_170 Hb_000174_120--Hb_003605_170 Hb_001433_210--Hb_000414_040 Hb_001546_140 Hb_001546_140 Hb_001433_210--Hb_001546_140 Hb_001433_210--Hb_147976_010 Hb_001433_210--Hb_031862_210 Hb_001433_210--Hb_000174_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0554357 12.4753 2.89458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0642436 0 0.0170695 8.552

CAGE analysis