Hb_000143_030

Information

Type -
Description -
Location Contig143: 53492-63302
Sequence    

Annotation

kegg
ID sot:102604542
description uncharacterized LOC102604542
nr
ID XP_012066659.1
description PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1T8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00233 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11348: 54805-55376 , PASA_asmbl_11349: 55559-62964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000143_030 0.0 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
2 Hb_005183_120 0.0891052936 - - protein translocase, putative [Ricinus communis]
3 Hb_009113_070 0.0924650726 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
4 Hb_001898_160 0.0937616105 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
5 Hb_000047_030 0.1024645453 - - tfiif-alpha, putative [Ricinus communis]
6 Hb_000676_150 0.1040397606 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
7 Hb_004116_140 0.1044120711 - - nuclear transcription factor, X-box binding, putative [Ricinus communis]
8 Hb_000815_070 0.1069225546 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
9 Hb_000165_160 0.1078938728 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
10 Hb_000206_210 0.1090703173 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
11 Hb_000705_240 0.1097547269 - - DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis]
12 Hb_172932_010 0.1124731895 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_011909_100 0.1126867066 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003688_150 0.114813508 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_000985_030 0.1155931125 - - PREDICTED: RRP15-like protein [Populus euphratica]
16 Hb_001318_270 0.1163836932 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
17 Hb_000482_090 0.1175676858 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]
18 Hb_007632_220 0.117993645 - - RNA-binding protein, putative [Ricinus communis]
19 Hb_000783_020 0.1182844143 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
20 Hb_003053_020 0.1203610328 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000143_030 Hb_000143_030 Hb_005183_120 Hb_005183_120 Hb_000143_030--Hb_005183_120 Hb_009113_070 Hb_009113_070 Hb_000143_030--Hb_009113_070 Hb_001898_160 Hb_001898_160 Hb_000143_030--Hb_001898_160 Hb_000047_030 Hb_000047_030 Hb_000143_030--Hb_000047_030 Hb_000676_150 Hb_000676_150 Hb_000143_030--Hb_000676_150 Hb_004116_140 Hb_004116_140 Hb_000143_030--Hb_004116_140 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_000165_160 Hb_000165_160 Hb_005183_120--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_000783_020 Hb_000783_020 Hb_005183_120--Hb_000783_020 Hb_000398_040 Hb_000398_040 Hb_009113_070--Hb_000398_040 Hb_172932_010 Hb_172932_010 Hb_009113_070--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_009113_070--Hb_011534_030 Hb_000617_150 Hb_000617_150 Hb_009113_070--Hb_000617_150 Hb_000841_020 Hb_000841_020 Hb_009113_070--Hb_000841_020 Hb_001898_160--Hb_000047_030 Hb_082609_010 Hb_082609_010 Hb_001898_160--Hb_082609_010 Hb_000236_070 Hb_000236_070 Hb_001898_160--Hb_000236_070 Hb_011909_100 Hb_011909_100 Hb_001898_160--Hb_011909_100 Hb_015198_020 Hb_015198_020 Hb_001898_160--Hb_015198_020 Hb_000047_030--Hb_015198_020 Hb_000574_390 Hb_000574_390 Hb_000047_030--Hb_000574_390 Hb_000928_210 Hb_000928_210 Hb_000047_030--Hb_000928_210 Hb_013405_030 Hb_013405_030 Hb_000047_030--Hb_013405_030 Hb_004724_080 Hb_004724_080 Hb_000047_030--Hb_004724_080 Hb_001140_220 Hb_001140_220 Hb_000047_030--Hb_001140_220 Hb_034380_020 Hb_034380_020 Hb_000676_150--Hb_034380_020 Hb_000482_090 Hb_000482_090 Hb_000676_150--Hb_000482_090 Hb_011942_090 Hb_011942_090 Hb_000676_150--Hb_011942_090 Hb_000676_150--Hb_000165_160 Hb_127552_030 Hb_127552_030 Hb_000676_150--Hb_127552_030 Hb_004116_140--Hb_005183_120 Hb_004116_140--Hb_000676_150 Hb_034482_020 Hb_034482_020 Hb_004116_140--Hb_034482_020 Hb_004116_140--Hb_000482_090 Hb_024185_020 Hb_024185_020 Hb_004116_140--Hb_024185_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.19797 0.749945 1.59031 0.873985 2.67334 1.78598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98124 3.10657 5.10917 2.46277 2.77932

CAGE analysis