Hb_000143_050

Information

Type -
Description -
Location Contig143: 103373-103867
Sequence    

Annotation

kegg
ID rcu:RCOM_1588580
description hypothetical protein
nr
ID XP_012068275.1
description PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
swissprot
ID Q9C500
description WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2 PE=1 SV=1
trembl
ID A0A067LAZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16077 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11350: 103320-104208
cDNA
(Sanger)
(ID:Location)		 003_C06.ab1: 103320-104039 , 009_J04.ab1: 103342-104042 , 013_D19.ab1: 103426-103574 , 018_L10.ab1: 103320-104046 , 036_C10.ab1: 103342-104016 , 045_A10.ab1: 103331-103927 , 050_J22.ab1: 103320-104002

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000143_050 0.0 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
2 Hb_030765_020 0.0797476645 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_005276_100 0.0964220412 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
4 Hb_000032_260 0.0984274261 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
5 Hb_005615_070 0.0985073759 - - Rab7 [Hevea brasiliensis]
6 Hb_001722_040 0.0990210727 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_183963_020 0.105494436 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
8 Hb_001621_180 0.1062600066 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
9 Hb_000078_030 0.1072497689 - - conserved hypothetical protein [Ricinus communis]
10 Hb_025087_010 0.1092868479 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
11 Hb_002221_080 0.1158694855 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
12 Hb_012799_060 0.1163706057 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_000193_230 0.1165546112 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
14 Hb_000580_170 0.1187503007 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
15 Hb_000085_300 0.1201910714 - - -
16 Hb_000284_010 0.12073408 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
17 Hb_001198_030 0.1215468043 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
18 Hb_001102_010 0.1227031946 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
19 Hb_000062_580 0.123591384 - - ATP binding protein, putative [Ricinus communis]
20 Hb_115919_020 0.1243888892 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000143_050 Hb_000143_050 Hb_030765_020 Hb_030765_020 Hb_000143_050--Hb_030765_020 Hb_005276_100 Hb_005276_100 Hb_000143_050--Hb_005276_100 Hb_000032_260 Hb_000032_260 Hb_000143_050--Hb_000032_260 Hb_005615_070 Hb_005615_070 Hb_000143_050--Hb_005615_070 Hb_001722_040 Hb_001722_040 Hb_000143_050--Hb_001722_040 Hb_183963_020 Hb_183963_020 Hb_000143_050--Hb_183963_020 Hb_012799_060 Hb_012799_060 Hb_030765_020--Hb_012799_060 Hb_000078_030 Hb_000078_030 Hb_030765_020--Hb_000078_030 Hb_060668_010 Hb_060668_010 Hb_030765_020--Hb_060668_010 Hb_001741_080 Hb_001741_080 Hb_030765_020--Hb_001741_080 Hb_000580_170 Hb_000580_170 Hb_030765_020--Hb_000580_170 Hb_000580_160 Hb_000580_160 Hb_005276_100--Hb_000580_160 Hb_005276_100--Hb_000032_260 Hb_000061_160 Hb_000061_160 Hb_005276_100--Hb_000061_160 Hb_001621_180 Hb_001621_180 Hb_005276_100--Hb_001621_180 Hb_000853_360 Hb_000853_360 Hb_005276_100--Hb_000853_360 Hb_005867_040 Hb_005867_040 Hb_000032_260--Hb_005867_040 Hb_000032_260--Hb_001621_180 Hb_000032_260--Hb_000061_160 Hb_000032_260--Hb_183963_020 Hb_005615_070--Hb_001621_180 Hb_004297_040 Hb_004297_040 Hb_005615_070--Hb_004297_040 Hb_005615_070--Hb_000032_260 Hb_002291_030 Hb_002291_030 Hb_005615_070--Hb_002291_030 Hb_000085_300 Hb_000085_300 Hb_005615_070--Hb_000085_300 Hb_001722_040--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_001722_040--Hb_025087_010 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_183963_020--Hb_025087_010 Hb_183963_020--Hb_000085_300 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5734.93 712.537 151.225 211.995 4005.9 3754.19
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8586.62 9640.27 5149.9 523.141 51.587

CAGE analysis