Hb_000144_060

Information

Type -
Description -
Location Contig144: 181205-187857
Sequence    

Annotation

kegg
ID rcu:RCOM_0517130
description hypothetical protein
nr
ID XP_012072959.1
description PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8GW20
description Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=2 SV=2
trembl
ID A0A067KYG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06749 PE=4 SV=1
Gene Ontology
ID GO:0009941
description iron-sulfur cluster biosynthesis family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11618: 181250-186695 , PASA_asmbl_11619: 181324-185636 , PASA_asmbl_11621: 187045-187413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_060 0.0 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000345_370 0.0531980875 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
3 Hb_000309_020 0.069063168 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
4 Hb_011861_050 0.0714021622 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
5 Hb_025477_050 0.072123063 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002542_160 0.0823509881 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
7 Hb_002282_070 0.0853293367 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
8 Hb_000220_210 0.085668365 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
9 Hb_006787_090 0.0862971595 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
10 Hb_001472_160 0.0863219953 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
11 Hb_033312_010 0.0868481824 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001660_120 0.0873070399 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
13 Hb_000363_060 0.0921027786 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_000480_040 0.0940721388 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
15 Hb_013405_080 0.0982588904 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
16 Hb_000311_120 0.0985026368 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
17 Hb_007769_040 0.0997097267 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_000941_100 0.1007554714 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
19 Hb_002997_070 0.1007676557 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
20 Hb_016461_030 0.1010736926 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_060 Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_000144_060--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_000144_060--Hb_000309_020 Hb_011861_050 Hb_011861_050 Hb_000144_060--Hb_011861_050 Hb_025477_050 Hb_025477_050 Hb_000144_060--Hb_025477_050 Hb_002542_160 Hb_002542_160 Hb_000144_060--Hb_002542_160 Hb_002282_070 Hb_002282_070 Hb_000144_060--Hb_002282_070 Hb_000345_370--Hb_002282_070 Hb_000345_370--Hb_002542_160 Hb_000220_210 Hb_000220_210 Hb_000345_370--Hb_000220_210 Hb_000345_370--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_000345_370--Hb_016461_030 Hb_000309_020--Hb_002542_160 Hb_000480_040 Hb_000480_040 Hb_000309_020--Hb_000480_040 Hb_000309_020--Hb_000220_210 Hb_000085_070 Hb_000085_070 Hb_000309_020--Hb_000085_070 Hb_011861_050--Hb_000480_040 Hb_011861_050--Hb_000345_370 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080 Hb_013405_080 Hb_013405_080 Hb_025477_050--Hb_013405_080 Hb_007769_040 Hb_007769_040 Hb_025477_050--Hb_007769_040 Hb_001472_160 Hb_001472_160 Hb_025477_050--Hb_001472_160 Hb_025477_050--Hb_000345_370 Hb_001660_120 Hb_001660_120 Hb_025477_050--Hb_001660_120 Hb_002542_160--Hb_000220_210 Hb_002542_160--Hb_000085_070 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_001427_040 Hb_001427_040 Hb_002282_070--Hb_001427_040 Hb_002282_070--Hb_016461_030 Hb_003777_020 Hb_003777_020 Hb_002282_070--Hb_003777_020 Hb_002685_060 Hb_002685_060 Hb_002282_070--Hb_002685_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.40417 2.52082 6.87076 3.22048 2.55092 2.86963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03177 2.20797 1.56594 2.38657 11.9224

CAGE analysis