Hb_000144_080

Information

Type -
Description -
Location Contig144: 194944-196892
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17720g
description POPTRDRAFT_770043; hypothetical protein
nr
ID XP_010274458.1
description PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID B9HY16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11626: 194918-197084 , PASA_asmbl_11627: 194918-196972 , PASA_asmbl_11628: 195871-196091 , PASA_asmbl_11629: 196230-197050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_080 0.0 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
2 Hb_000297_230 0.111890691 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
3 Hb_003185_110 0.1157883965 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
4 Hb_003058_080 0.1161245166 - - Chaperonin 10 isoform 1 [Theobroma cacao]
5 Hb_001998_120 0.1273280578 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
6 Hb_002768_030 0.1278484105 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_000025_230 0.1281101329 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
8 Hb_168878_010 0.1294582534 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_002783_270 0.1334366828 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
10 Hb_000633_020 0.1338803874 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
11 Hb_001143_220 0.1347321554 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
12 Hb_001459_080 0.1354346221 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
13 Hb_000236_390 0.1358512849 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
14 Hb_001476_070 0.1363540505 - - MinE protein [Manihot esculenta]
15 Hb_000321_160 0.1372218165 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
16 Hb_029510_020 0.1372379823 - - hypothetical protein JCGZ_06306 [Jatropha curcas]
17 Hb_006831_130 0.1380296363 - - catalytic, putative [Ricinus communis]
18 Hb_129924_010 0.1395233782 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
19 Hb_000453_090 0.139532915 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
20 Hb_003683_110 0.1396399717 - - JHL10I11.3 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_080 Hb_000144_080 Hb_000297_230 Hb_000297_230 Hb_000144_080--Hb_000297_230 Hb_003185_110 Hb_003185_110 Hb_000144_080--Hb_003185_110 Hb_003058_080 Hb_003058_080 Hb_000144_080--Hb_003058_080 Hb_001998_120 Hb_001998_120 Hb_000144_080--Hb_001998_120 Hb_002768_030 Hb_002768_030 Hb_000144_080--Hb_002768_030 Hb_000025_230 Hb_000025_230 Hb_000144_080--Hb_000025_230 Hb_003053_010 Hb_003053_010 Hb_000297_230--Hb_003053_010 Hb_000297_230--Hb_002768_030 Hb_000948_210 Hb_000948_210 Hb_000297_230--Hb_000948_210 Hb_002217_050 Hb_002217_050 Hb_000297_230--Hb_002217_050 Hb_077354_010 Hb_077354_010 Hb_000297_230--Hb_077354_010 Hb_003683_110 Hb_003683_110 Hb_000297_230--Hb_003683_110 Hb_003018_010 Hb_003018_010 Hb_003185_110--Hb_003018_010 Hb_003185_110--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_003185_110--Hb_000260_550 Hb_007044_130 Hb_007044_130 Hb_003185_110--Hb_007044_130 Hb_126861_010 Hb_126861_010 Hb_003185_110--Hb_126861_010 Hb_000236_390 Hb_000236_390 Hb_003185_110--Hb_000236_390 Hb_002783_270 Hb_002783_270 Hb_003058_080--Hb_002783_270 Hb_003058_080--Hb_007044_130 Hb_004052_020 Hb_004052_020 Hb_003058_080--Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_012016_010 Hb_012016_010 Hb_001998_120--Hb_012016_010 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_000444_080 Hb_000444_080 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_002768_030--Hb_003683_110 Hb_001780_040 Hb_001780_040 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_000996_140 Hb_000996_140 Hb_002768_030--Hb_000996_140 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_001459_080 Hb_001459_080 Hb_000025_230--Hb_001459_080 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_008112_040 Hb_008112_040 Hb_000025_230--Hb_008112_040 Hb_168878_010 Hb_168878_010 Hb_000025_230--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_000025_230--Hb_002374_170 Hb_011381_060 Hb_011381_060 Hb_000025_230--Hb_011381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69569 1.47859 4.38573 1.21132 2.56691 1.27945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44781 7.93432 1.60701 0.591342 1.46878

CAGE analysis