Hb_000144_090

Information

Type transcription factor
Description TF Family: GNAT
Location Contig144: 199404-201410
Sequence    

Annotation

kegg
ID rcu:RCOM_0517100
description Glucosamine 6-phosphate N-acetyltransferase, putative (EC:2.3.1.4)
nr
ID XP_002528747.1
description Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
swissprot
ID Q9LFU9
description Glucosamine 6-phosphate N-acetyltransferase OS=Arabidopsis thaliana GN=GNA1 PE=1 SV=1
trembl
ID B9SRX8
description Glucosamine 6-phosphate N-acetyltransferase, putative OS=Ricinus communis GN=RCOM_0517100 PE=4 SV=1
Gene Ontology
ID GO:0004343
description glucosamine 6-phosphate n-acetyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11630: 199583-201407
cDNA
(Sanger)
(ID:Location)		 001_B16r.ab1: 202338-204865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_090 0.0 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
2 Hb_023226_010 0.0782412496 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
3 Hb_011161_040 0.0944360148 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
4 Hb_008173_120 0.0956266738 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000032_540 0.1006794879 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
6 Hb_007193_100 0.1008166978 - - syntaxin family protein [Populus trichocarpa]
7 Hb_007317_060 0.1034665399 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
8 Hb_000684_230 0.1043644739 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_004453_150 0.1066694549 - - BnaC02g13240D [Brassica napus]
10 Hb_001133_020 0.1099145337 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
11 Hb_000274_020 0.112111511 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
12 Hb_024650_050 0.1122158041 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
13 Hb_025193_050 0.1138251567 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
14 Hb_000048_050 0.1152722601 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
15 Hb_000189_530 0.1160157963 - - 40S ribosomal protein S24B [Hevea brasiliensis]
16 Hb_000380_010 0.116523684 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
17 Hb_000175_070 0.1165320444 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
18 Hb_011139_020 0.1171800576 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
19 Hb_003687_020 0.1191187154 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
20 Hb_094947_010 0.1205030412 - - surfeit locus protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000144_090 Hb_000144_090 Hb_023226_010 Hb_023226_010 Hb_000144_090--Hb_023226_010 Hb_011161_040 Hb_011161_040 Hb_000144_090--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_000144_090--Hb_008173_120 Hb_000032_540 Hb_000032_540 Hb_000144_090--Hb_000032_540 Hb_007193_100 Hb_007193_100 Hb_000144_090--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_000144_090--Hb_007317_060 Hb_001133_020 Hb_001133_020 Hb_023226_010--Hb_001133_020 Hb_023226_010--Hb_011161_040 Hb_023226_010--Hb_008173_120 Hb_023226_010--Hb_000032_540 Hb_000048_050 Hb_000048_050 Hb_023226_010--Hb_000048_050 Hb_004453_150 Hb_004453_150 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011161_040--Hb_000152_430 Hb_011161_040--Hb_001133_020 Hb_000684_230 Hb_000684_230 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_008173_120--Hb_007193_100 Hb_008173_120--Hb_007317_060 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_000103_140 Hb_000103_140 Hb_008173_120--Hb_000103_140 Hb_002259_030 Hb_002259_030 Hb_000032_540--Hb_002259_030 Hb_000189_530 Hb_000189_530 Hb_000032_540--Hb_000189_530 Hb_000032_540--Hb_011161_040 Hb_000175_400 Hb_000175_400 Hb_000032_540--Hb_000175_400 Hb_011016_090 Hb_011016_090 Hb_000032_540--Hb_011016_090 Hb_000175_070 Hb_000175_070 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_000380_010 Hb_000380_010 Hb_007317_060--Hb_000380_010 Hb_002259_150 Hb_002259_150 Hb_007317_060--Hb_002259_150 Hb_007317_060--Hb_000684_230 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1421 2.55746 2.34161 10.5654 16.3455 52.4902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.4601 42.9355 25.6342 7.28702 6.62928

CAGE analysis