Hb_000144_110

Information

Type -
Description -
Location Contig144: 205997-208317
Sequence    

Annotation

kegg
ID cic:CICLE_v10013189mg
description hypothetical protein
nr
ID XP_006430204.1
description hypothetical protein CICLE_v10013189mg [Citrus clementina]
swissprot
ID P46270
description Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1
trembl
ID V4UUU0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013189mg PE=4 SV=1
Gene Ontology
ID GO:0005750
description cytochrome b-c1 complex subunit 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11632: 206007-208202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_110 0.0 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
2 Hb_000815_270 0.0938212544 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011609_180 0.0941699518 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
4 Hb_001045_080 0.0968796589 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
5 Hb_009851_100 0.0969299167 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
6 Hb_000025_600 0.0988125878 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
7 Hb_009252_130 0.0999305038 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
8 Hb_000212_260 0.1019574118 - - acyl-carrier-protein [Triadica sebifera]
9 Hb_000099_060 0.1033637755 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
10 Hb_000134_330 0.1034223614 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
11 Hb_005590_020 0.1037296982 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
12 Hb_011689_050 0.1037480585 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
13 Hb_012753_230 0.1056553072 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
14 Hb_007741_050 0.1105762029 - - vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_000963_030 0.110870545 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
16 Hb_000526_150 0.1118198421 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
17 Hb_000805_130 0.1134024622 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001616_020 0.1137796895 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
19 Hb_001268_140 0.1149361881 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000563_240 0.1151597375 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_110 Hb_000144_110 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_009252_130 Hb_009252_130 Hb_000144_110--Hb_009252_130 Hb_000815_270--Hb_009252_130 Hb_000025_530 Hb_000025_530 Hb_000815_270--Hb_000025_530 Hb_000111_280 Hb_000111_280 Hb_000815_270--Hb_000111_280 Hb_009787_040 Hb_009787_040 Hb_000815_270--Hb_009787_040 Hb_005590_020 Hb_005590_020 Hb_000815_270--Hb_005590_020 Hb_000085_200 Hb_000085_200 Hb_011609_180--Hb_000085_200 Hb_000634_050 Hb_000634_050 Hb_011609_180--Hb_000634_050 Hb_000212_260 Hb_000212_260 Hb_011609_180--Hb_000212_260 Hb_007741_050 Hb_007741_050 Hb_011609_180--Hb_007741_050 Hb_000648_060 Hb_000648_060 Hb_011609_180--Hb_000648_060 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_000312_090 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_009851_100--Hb_001269_270 Hb_000134_330 Hb_000134_330 Hb_000025_600--Hb_000134_330 Hb_002296_060 Hb_002296_060 Hb_000025_600--Hb_002296_060 Hb_001818_020 Hb_001818_020 Hb_000025_600--Hb_001818_020 Hb_000025_600--Hb_001268_140 Hb_005701_020 Hb_005701_020 Hb_000025_600--Hb_005701_020 Hb_001300_270 Hb_001300_270 Hb_000025_600--Hb_001300_270 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.7598 7.69274 27.5276 16.1874 43.6843 38.9668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.0839 181.431 68.7141 22.1914 5.04692

CAGE analysis