Hb_000144_140

Information

Type -
Description -
Location Contig144: 231764-237458
Sequence    

Annotation

kegg
ID vvi:100854167
description uncharacterized LOC100854167
nr
ID XP_012066610.1
description PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5BK51
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_023498 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_140 0.0 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
2 Hb_001009_130 0.2121064847 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
3 Hb_001277_310 0.222187812 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
4 Hb_135624_010 0.249704809 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
5 Hb_062244_010 0.275853016 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_004413_030 0.2787716313 - - Retrotransposon protein, putative [Theobroma cacao]
7 Hb_003446_040 0.3211947719 - - -
8 Hb_097968_010 0.3237472111 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
9 Hb_001006_240 0.3291482394 - - -
10 Hb_010142_080 0.3343907974 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
11 Hb_005532_010 0.335447423 - - -
12 Hb_000816_270 0.338721776 - - -
13 Hb_004228_090 0.341769251 - - -
14 Hb_000192_110 0.3514976694 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
15 Hb_002311_060 0.3523600747 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
16 Hb_000190_240 0.3545666184 - - unnamed protein product [Coffea canephora]
17 Hb_054127_050 0.3555547634 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
18 Hb_002028_100 0.3556088092 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
19 Hb_002139_010 0.3561047533 - - -
20 Hb_046440_010 0.3576919108 - - hypothetical protein JCGZ_06190 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_140 Hb_000144_140 Hb_001009_130 Hb_001009_130 Hb_000144_140--Hb_001009_130 Hb_001277_310 Hb_001277_310 Hb_000144_140--Hb_001277_310 Hb_135624_010 Hb_135624_010 Hb_000144_140--Hb_135624_010 Hb_062244_010 Hb_062244_010 Hb_000144_140--Hb_062244_010 Hb_004413_030 Hb_004413_030 Hb_000144_140--Hb_004413_030 Hb_003446_040 Hb_003446_040 Hb_000144_140--Hb_003446_040 Hb_001009_130--Hb_135624_010 Hb_001009_130--Hb_062244_010 Hb_001009_130--Hb_004413_030 Hb_001009_130--Hb_001277_310 Hb_001009_130--Hb_003446_040 Hb_001277_310--Hb_004413_030 Hb_001277_310--Hb_003446_040 Hb_006344_010 Hb_006344_010 Hb_001277_310--Hb_006344_010 Hb_001277_310--Hb_135624_010 Hb_135624_010--Hb_062244_010 Hb_135624_010--Hb_004413_030 Hb_005532_010 Hb_005532_010 Hb_135624_010--Hb_005532_010 Hb_135624_010--Hb_006344_010 Hb_062244_010--Hb_005532_010 Hb_062244_010--Hb_004413_030 Hb_010142_080 Hb_010142_080 Hb_062244_010--Hb_010142_080 Hb_021616_010 Hb_021616_010 Hb_062244_010--Hb_021616_010 Hb_004413_030--Hb_005532_010 Hb_004413_030--Hb_003446_040 Hb_003446_040--Hb_005532_010 Hb_003446_040--Hb_135624_010 Hb_123521_010 Hb_123521_010 Hb_003446_040--Hb_123521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278049 0 0 0.0175706 0 0.0195874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.073709 0.0322199 0

CAGE analysis