Hb_000146_020

Information

Type -
Description -
Location Contig146: 71259-76798
Sequence    

Annotation

kegg
ID rcu:RCOM_0811440
description hypothetical protein
nr
ID XP_012075811.1
description PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
swissprot
ID Q9SHU7
description Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1 SV=1
trembl
ID A0A067LF83
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15453 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11857: 71404-76797
cDNA
(Sanger)
(ID:Location)		 033_B24.ab1: 71524-71636

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_020 0.0 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
2 Hb_000347_410 0.050105788 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
3 Hb_000834_270 0.0548047733 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
4 Hb_003376_030 0.0575814087 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
5 Hb_007943_090 0.0628420884 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
6 Hb_002027_210 0.0631575447 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_008289_060 0.0649740661 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
8 Hb_014720_080 0.0688364537 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
9 Hb_012675_060 0.0696815367 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
10 Hb_000025_120 0.0697999292 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
11 Hb_000009_160 0.0719041881 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
12 Hb_002918_200 0.0729315888 - - -
13 Hb_055062_030 0.074480364 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
14 Hb_001722_100 0.075109957 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005432_030 0.0761066818 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
16 Hb_000170_010 0.0761809399 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_002963_010 0.0776102243 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
18 Hb_004586_320 0.0776770049 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
19 Hb_000173_220 0.0794266269 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
20 Hb_007382_150 0.0810977818 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000146_020 Hb_000146_020 Hb_000347_410 Hb_000347_410 Hb_000146_020--Hb_000347_410 Hb_000834_270 Hb_000834_270 Hb_000146_020--Hb_000834_270 Hb_003376_030 Hb_003376_030 Hb_000146_020--Hb_003376_030 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_002027_210 Hb_002027_210 Hb_000146_020--Hb_002027_210 Hb_008289_060 Hb_008289_060 Hb_000146_020--Hb_008289_060 Hb_029866_020 Hb_029866_020 Hb_000347_410--Hb_029866_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_000347_410--Hb_003376_030 Hb_004586_320 Hb_004586_320 Hb_000347_410--Hb_004586_320 Hb_000240_090 Hb_000240_090 Hb_000347_410--Hb_000240_090 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_002097_060 Hb_002097_060 Hb_003376_030--Hb_002097_060 Hb_148200_010 Hb_148200_010 Hb_003376_030--Hb_148200_010 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_003376_030--Hb_002027_210 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_007943_090--Hb_008289_060 Hb_007943_090--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_007943_090--Hb_001998_050 Hb_007943_090--Hb_003376_030 Hb_000173_220 Hb_000173_220 Hb_002027_210--Hb_000173_220 Hb_005432_030 Hb_005432_030 Hb_002027_210--Hb_005432_030 Hb_001191_090 Hb_001191_090 Hb_002027_210--Hb_001191_090 Hb_002027_210--Hb_003455_040 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_055062_030 Hb_055062_030 Hb_008289_060--Hb_055062_030 Hb_008289_060--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.5322 23.6567 14.6296 19.4266 41.3451 39.027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.5914 98.1165 85.6607 27.5112 19.0829

CAGE analysis