Hb_000146_040

Information

Type -
Description -
Location Contig146: 81699-86678
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30770g
description POPTRDRAFT_813614; hypothetical protein
nr
ID XP_012075852.1
description PREDICTED: reticulon-like protein B11 [Jatropha curcas]
swissprot
ID Q9LT71
description Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1
trembl
ID A0A067LN66
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_15459 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11859: 83150-83412 , PASA_asmbl_11860: 85329-86754
cDNA
(Sanger)
(ID:Location)		 018_B13.ab1: 85329-86754

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_040 0.0 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
2 Hb_000140_350 0.056866387 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033286_010 0.0626848714 - - PREDICTED: probable beta-1,3-galactosyltransferase 14 [Jatropha curcas]
4 Hb_004102_170 0.0635667146 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
5 Hb_000477_100 0.0659347735 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
6 Hb_007481_010 0.0774826314 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
7 Hb_005797_010 0.0816645153 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
8 Hb_000352_300 0.081839217 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
9 Hb_003683_020 0.0828375218 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_003671_010 0.0838788371 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
11 Hb_000009_400 0.0849115068 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
12 Hb_001269_330 0.0850538271 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
13 Hb_003528_030 0.0858928757 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
14 Hb_000208_280 0.0859184251 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_000696_010 0.0872253604 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
16 Hb_002728_080 0.0878596524 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_006002_040 0.0884392899 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]
18 Hb_159809_030 0.0890243746 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
19 Hb_003617_020 0.0903938099 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
20 Hb_000130_180 0.0925447063 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000146_040 Hb_000146_040 Hb_000140_350 Hb_000140_350 Hb_000146_040--Hb_000140_350 Hb_033286_010 Hb_033286_010 Hb_000146_040--Hb_033286_010 Hb_004102_170 Hb_004102_170 Hb_000146_040--Hb_004102_170 Hb_000477_100 Hb_000477_100 Hb_000146_040--Hb_000477_100 Hb_007481_010 Hb_007481_010 Hb_000146_040--Hb_007481_010 Hb_005797_010 Hb_005797_010 Hb_000146_040--Hb_005797_010 Hb_000836_280 Hb_000836_280 Hb_000140_350--Hb_000836_280 Hb_000208_280 Hb_000208_280 Hb_000140_350--Hb_000208_280 Hb_000140_350--Hb_004102_170 Hb_000130_180 Hb_000130_180 Hb_000140_350--Hb_000130_180 Hb_000140_350--Hb_000477_100 Hb_003671_010 Hb_003671_010 Hb_033286_010--Hb_003671_010 Hb_001009_320 Hb_001009_320 Hb_033286_010--Hb_001009_320 Hb_005946_210 Hb_005946_210 Hb_033286_010--Hb_005946_210 Hb_000522_170 Hb_000522_170 Hb_033286_010--Hb_000522_170 Hb_000006_010 Hb_000006_010 Hb_033286_010--Hb_000006_010 Hb_000787_160 Hb_000787_160 Hb_004102_170--Hb_000787_160 Hb_000049_020 Hb_000049_020 Hb_004102_170--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_004102_170--Hb_000345_160 Hb_001405_210 Hb_001405_210 Hb_004102_170--Hb_001405_210 Hb_004102_170--Hb_005797_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_003528_030 Hb_003528_030 Hb_007481_010--Hb_003528_030 Hb_007481_010--Hb_000352_300 Hb_001269_330 Hb_001269_330 Hb_007481_010--Hb_001269_330 Hb_000256_150 Hb_000256_150 Hb_007481_010--Hb_000256_150 Hb_007481_010--Hb_000046_500 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_000009_400 Hb_000009_400 Hb_005797_010--Hb_000009_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48529 10.4418 11.3115 27.6706 12.4521 15.059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.05327 9.53853 12.0434 12.2114 9.94659

CAGE analysis