Hb_000146_060

Information

Type -
Description -
Location Contig146: 104032-106116
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_060 0.0 - - -
2 Hb_004330_030 0.239800598 - - -
3 Hb_004939_020 0.2464580581 - - gag/pol protein [Bryonia dioica]
4 Hb_012107_070 0.2535942453 - - -
5 Hb_003362_060 0.2580103889 - - -
6 Hb_001214_170 0.2594229867 - - pyruvate kinase family protein [Medicago truncatula]
7 Hb_113823_010 0.259984927 - - -
8 Hb_131949_010 0.2620684733 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
9 Hb_171659_010 0.2626238647 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
10 Hb_001951_120 0.2675297155 - - -
11 Hb_070745_010 0.2678037256 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
12 Hb_007926_010 0.2734814202 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
13 Hb_000171_040 0.2771521397 - - -
14 Hb_084426_010 0.2797527274 - - -
15 Hb_004970_040 0.2874905224 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_007333_020 0.2901883193 - - -
17 Hb_003816_020 0.2910193421 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
18 Hb_005535_060 0.2935133498 - - -
19 Hb_010979_010 0.3018959702 - - -
20 Hb_022452_010 0.3023053782 - - -

Gene co-expression network

sample Hb_000146_060 Hb_000146_060 Hb_004330_030 Hb_004330_030 Hb_000146_060--Hb_004330_030 Hb_004939_020 Hb_004939_020 Hb_000146_060--Hb_004939_020 Hb_012107_070 Hb_012107_070 Hb_000146_060--Hb_012107_070 Hb_003362_060 Hb_003362_060 Hb_000146_060--Hb_003362_060 Hb_001214_170 Hb_001214_170 Hb_000146_060--Hb_001214_170 Hb_113823_010 Hb_113823_010 Hb_000146_060--Hb_113823_010 Hb_001944_030 Hb_001944_030 Hb_004330_030--Hb_001944_030 Hb_004330_030--Hb_001214_170 Hb_005608_010 Hb_005608_010 Hb_004330_030--Hb_005608_010 Hb_007805_020 Hb_007805_020 Hb_004330_030--Hb_007805_020 Hb_118346_010 Hb_118346_010 Hb_004330_030--Hb_118346_010 Hb_003816_020 Hb_003816_020 Hb_004939_020--Hb_003816_020 Hb_022452_010 Hb_022452_010 Hb_004939_020--Hb_022452_010 Hb_171659_010 Hb_171659_010 Hb_004939_020--Hb_171659_010 Hb_000205_070 Hb_000205_070 Hb_004939_020--Hb_000205_070 Hb_009189_030 Hb_009189_030 Hb_004939_020--Hb_009189_030 Hb_003337_070 Hb_003337_070 Hb_004939_020--Hb_003337_070 Hb_005517_010 Hb_005517_010 Hb_012107_070--Hb_005517_010 Hb_036693_010 Hb_036693_010 Hb_012107_070--Hb_036693_010 Hb_028848_030 Hb_028848_030 Hb_012107_070--Hb_028848_030 Hb_005155_020 Hb_005155_020 Hb_012107_070--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_012107_070--Hb_061466_020 Hb_000214_090 Hb_000214_090 Hb_012107_070--Hb_000214_090 Hb_131949_010 Hb_131949_010 Hb_003362_060--Hb_131949_010 Hb_084426_010 Hb_084426_010 Hb_003362_060--Hb_084426_010 Hb_000171_040 Hb_000171_040 Hb_003362_060--Hb_000171_040 Hb_184798_040 Hb_184798_040 Hb_003362_060--Hb_184798_040 Hb_034569_020 Hb_034569_020 Hb_003362_060--Hb_034569_020 Hb_004899_280 Hb_004899_280 Hb_003362_060--Hb_004899_280 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_001214_170--Hb_001944_030 Hb_167508_010 Hb_167508_010 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_001214_170--Hb_113823_010 Hb_010979_010 Hb_010979_010 Hb_113823_010--Hb_010979_010 Hb_000123_100 Hb_000123_100 Hb_113823_010--Hb_000123_100 Hb_004524_070 Hb_004524_070 Hb_113823_010--Hb_004524_070 Hb_099990_030 Hb_099990_030 Hb_113823_010--Hb_099990_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206181 0.237885 0.0562427 0 0.253956 0.0429296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis