Hb_000146_070

Information

Type -
Description -
Location Contig146: 128061-132743
Sequence    

Annotation

kegg
ID rcu:RCOM_0811340
description ribosomal pseudouridine synthase, putative (EC:3.2.1.17)
nr
ID XP_012075891.1
description PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
swissprot
ID Q9LT72
description RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1
trembl
ID A0A067LF94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15463 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11865: 129872-131856 , PASA_asmbl_11866: 131060-131581 , PASA_asmbl_11867: 131879-132468
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000146_070 0.0 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
2 Hb_000035_180 0.0547789646 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
3 Hb_002078_350 0.0602030081 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
4 Hb_000373_070 0.0628512681 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
5 Hb_000684_470 0.0660413998 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
6 Hb_156279_020 0.0668844983 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
7 Hb_003226_140 0.07189902 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
8 Hb_005779_060 0.0730807451 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
9 Hb_008900_010 0.0740355029 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
10 Hb_004934_100 0.0770989698 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_240 0.0772054209 - - PREDICTED: protein DYAD [Jatropha curcas]
12 Hb_000215_110 0.0779295788 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
13 Hb_000504_140 0.0792633689 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
14 Hb_000331_550 0.080694387 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
15 Hb_007479_040 0.0822478923 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000665_100 0.0826865461 - - PREDICTED: neurochondrin [Jatropha curcas]
17 Hb_001470_030 0.082861962 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
18 Hb_019280_050 0.0830174011 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
19 Hb_000768_090 0.0830175527 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
20 Hb_008453_030 0.0830822513 - - Thioredoxin superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000146_070 Hb_000146_070 Hb_000035_180 Hb_000035_180 Hb_000146_070--Hb_000035_180 Hb_002078_350 Hb_002078_350 Hb_000146_070--Hb_002078_350 Hb_000373_070 Hb_000373_070 Hb_000146_070--Hb_000373_070 Hb_000684_470 Hb_000684_470 Hb_000146_070--Hb_000684_470 Hb_156279_020 Hb_156279_020 Hb_000146_070--Hb_156279_020 Hb_003226_140 Hb_003226_140 Hb_000146_070--Hb_003226_140 Hb_000035_180--Hb_156279_020 Hb_000035_180--Hb_002078_350 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000340_180 Hb_000340_180 Hb_000035_180--Hb_000340_180 Hb_000331_260 Hb_000331_260 Hb_000035_180--Hb_000331_260 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_002078_350--Hb_156279_020 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_000684_470--Hb_156279_020 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_156279_020--Hb_000331_550 Hb_002303_070 Hb_002303_070 Hb_003226_140--Hb_002303_070 Hb_003226_140--Hb_000215_110 Hb_002473_130 Hb_002473_130 Hb_003226_140--Hb_002473_130 Hb_000468_060 Hb_000468_060 Hb_003226_140--Hb_000468_060 Hb_001599_040 Hb_001599_040 Hb_003226_140--Hb_001599_040 Hb_005357_080 Hb_005357_080 Hb_003226_140--Hb_005357_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29017 1.46954 1.78756 1.30652 1.85518 2.20222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61796 2.69526 2.24268 1.96981 1.59381

CAGE analysis