Hb_000147_040

Information

Type -
Description -
Location Contig147: 133229-137850
Sequence    

Annotation

kegg
ID pop:POPTR_0018s10630g
description POPTRDRAFT_669488; hypothetical protein
nr
ID XP_012077482.1
description PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
swissprot
ID O67588
description Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB PE=3 SV=1
trembl
ID A0A067KDG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07812 PE=4 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11909: 133804-134855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000147_040 0.0 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
2 Hb_010407_180 0.1102514459 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
3 Hb_002027_040 0.111685455 - - synapse-associated protein, putative [Ricinus communis]
4 Hb_065525_090 0.1121002357 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
5 Hb_000592_020 0.1154101782 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
6 Hb_019263_020 0.1156116247 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial [Jatropha curcas]
7 Hb_000120_960 0.1156288122 - - isocitrate dehydrogenase, putative [Ricinus communis]
8 Hb_001544_030 0.1156995425 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
9 Hb_002284_200 0.1180217477 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
10 Hb_000367_260 0.1184369545 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
11 Hb_000007_140 0.1186556502 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
12 Hb_013399_050 0.1222561716 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
13 Hb_009803_050 0.1225135449 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_003582_040 0.1241418522 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
15 Hb_000125_030 0.1259046916 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
16 Hb_003086_150 0.1260065651 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
17 Hb_020805_130 0.126532012 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_010883_050 0.1274620773 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_005545_100 0.1282073918 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
20 Hb_001504_100 0.1285445503 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000147_040 Hb_000147_040 Hb_010407_180 Hb_010407_180 Hb_000147_040--Hb_010407_180 Hb_002027_040 Hb_002027_040 Hb_000147_040--Hb_002027_040 Hb_065525_090 Hb_065525_090 Hb_000147_040--Hb_065525_090 Hb_000592_020 Hb_000592_020 Hb_000147_040--Hb_000592_020 Hb_019263_020 Hb_019263_020 Hb_000147_040--Hb_019263_020 Hb_000120_960 Hb_000120_960 Hb_000147_040--Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_001279_340 Hb_001279_340 Hb_010407_180--Hb_001279_340 Hb_000125_030 Hb_000125_030 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_005162_070 Hb_005162_070 Hb_002027_040--Hb_005162_070 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_004079_030 Hb_004079_030 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_000260_570 Hb_000260_570 Hb_002027_040--Hb_000260_570 Hb_002660_070 Hb_002660_070 Hb_065525_090--Hb_002660_070 Hb_034406_030 Hb_034406_030 Hb_065525_090--Hb_034406_030 Hb_001545_160 Hb_001545_160 Hb_065525_090--Hb_001545_160 Hb_065525_090--Hb_020805_130 Hb_002835_180 Hb_002835_180 Hb_065525_090--Hb_002835_180 Hb_065525_090--Hb_000120_960 Hb_000592_020--Hb_020805_130 Hb_000592_020--Hb_002027_040 Hb_000592_020--Hb_000567_120 Hb_004607_030 Hb_004607_030 Hb_000592_020--Hb_004607_030 Hb_000592_020--Hb_000120_960 Hb_000108_070 Hb_000108_070 Hb_000592_020--Hb_000108_070 Hb_013607_040 Hb_013607_040 Hb_019263_020--Hb_013607_040 Hb_002235_280 Hb_002235_280 Hb_019263_020--Hb_002235_280 Hb_003053_020 Hb_003053_020 Hb_019263_020--Hb_003053_020 Hb_002284_200 Hb_002284_200 Hb_019263_020--Hb_002284_200 Hb_011534_030 Hb_011534_030 Hb_019263_020--Hb_011534_030 Hb_000373_130 Hb_000373_130 Hb_019263_020--Hb_000373_130 Hb_000120_960--Hb_002660_070 Hb_000086_280 Hb_000086_280 Hb_000120_960--Hb_000086_280 Hb_003540_030 Hb_003540_030 Hb_000120_960--Hb_003540_030 Hb_000120_960--Hb_020805_130 Hb_007044_120 Hb_007044_120 Hb_000120_960--Hb_007044_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7301 8.41867 6.86245 9.71184 2.30672 5.26069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1995 20.1907 23.4678 6.88732 9.16577

CAGE analysis