Hb_000148_010

Information

Type -
Description -
Location Contig148: 8395-10793
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000148_010 0.0 - - -
2 Hb_033095_050 0.1990973823 - - hypothetical protein VITISV_038692 [Vitis vinifera]
3 Hb_005542_170 0.2115073863 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_025528_010 0.2123049563 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
5 Hb_002249_200 0.2146031731 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
6 Hb_002800_020 0.2271887319 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005031_010 0.2286825082 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
8 Hb_101624_010 0.228701675 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_028527_010 0.230588403 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_001244_030 0.2399969785 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_166631_010 0.2519580299 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
12 Hb_175748_010 0.254251556 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_007083_040 0.2703767885 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
14 Hb_001596_010 0.2712128326 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
15 Hb_003915_040 0.2731795377 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
16 Hb_000668_210 0.2829863325 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
17 Hb_005405_010 0.286332299 - - -
18 Hb_004762_020 0.2863623978 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_029238_030 0.2906951958 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
20 Hb_008008_020 0.2909726285 - - -

Gene co-expression network

sample Hb_000148_010 Hb_000148_010 Hb_033095_050 Hb_033095_050 Hb_000148_010--Hb_033095_050 Hb_005542_170 Hb_005542_170 Hb_000148_010--Hb_005542_170 Hb_025528_010 Hb_025528_010 Hb_000148_010--Hb_025528_010 Hb_002249_200 Hb_002249_200 Hb_000148_010--Hb_002249_200 Hb_002800_020 Hb_002800_020 Hb_000148_010--Hb_002800_020 Hb_005031_010 Hb_005031_010 Hb_000148_010--Hb_005031_010 Hb_033095_050--Hb_005542_170 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_025528_010 Hb_033095_050--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_033095_050--Hb_101624_010 Hb_033095_050--Hb_002249_200 Hb_005542_170--Hb_025528_010 Hb_005542_170--Hb_002249_200 Hb_005542_170--Hb_005031_010 Hb_005542_170--Hb_101624_010 Hb_001244_030 Hb_001244_030 Hb_005542_170--Hb_001244_030 Hb_025528_010--Hb_002249_200 Hb_025528_010--Hb_001244_030 Hb_028527_010 Hb_028527_010 Hb_025528_010--Hb_028527_010 Hb_025528_010--Hb_005031_010 Hb_002249_200--Hb_001244_030 Hb_002249_200--Hb_028527_010 Hb_002249_200--Hb_005031_010 Hb_001596_010 Hb_001596_010 Hb_002800_020--Hb_001596_010 Hb_002800_020--Hb_005031_010 Hb_002800_020--Hb_101624_010 Hb_002800_020--Hb_005542_170 Hb_002800_020--Hb_025528_010 Hb_005031_010--Hb_101624_010 Hb_002400_430 Hb_002400_430 Hb_005031_010--Hb_002400_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.012189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0249127 0 0.0198916 0.104184

CAGE analysis