Hb_000152_140

Information

Type -
Description -
Location Contig152: 94503-100100
Sequence    

Annotation

kegg
ID rcu:RCOM_1498590
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012090372.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
swissprot
ID Q41382
description DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1
trembl
ID A0A067JS50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26200 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12954: 94299-100240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_140 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
2 Hb_003086_020 0.0702034722 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
3 Hb_002686_270 0.0708738286 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002025_320 0.0730854509 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
5 Hb_000700_090 0.0741697291 - - protein with unknown function [Ricinus communis]
6 Hb_000696_110 0.0768999716 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_005941_010 0.0786803922 - - PREDICTED: protein SAND [Jatropha curcas]
8 Hb_000805_090 0.0870427963 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
9 Hb_006602_020 0.0884275031 - - unknown [Medicago truncatula]
10 Hb_000665_040 0.0901298325 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
11 Hb_002357_040 0.0940616905 - - latex-abundant protein [Hevea brasiliensis]
12 Hb_004662_030 0.0963009006 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
13 Hb_033491_010 0.0966883622 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_133271_020 0.0968222332 - - prohibitin, putative [Ricinus communis]
15 Hb_002207_100 0.0979420307 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
16 Hb_004046_010 0.097980524 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
17 Hb_098709_010 0.0980236229 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
18 Hb_001243_050 0.0989674359 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
19 Hb_008066_010 0.1002195192 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
20 Hb_000975_290 0.1003421066 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_140 Hb_000152_140 Hb_003086_020 Hb_003086_020 Hb_000152_140--Hb_003086_020 Hb_002686_270 Hb_002686_270 Hb_000152_140--Hb_002686_270 Hb_002025_320 Hb_002025_320 Hb_000152_140--Hb_002025_320 Hb_000700_090 Hb_000700_090 Hb_000152_140--Hb_000700_090 Hb_000696_110 Hb_000696_110 Hb_000152_140--Hb_000696_110 Hb_005941_010 Hb_005941_010 Hb_000152_140--Hb_005941_010 Hb_003086_110 Hb_003086_110 Hb_003086_020--Hb_003086_110 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_000272_100 Hb_000272_100 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010 Hb_001030_120 Hb_001030_120 Hb_002686_270--Hb_001030_120 Hb_002686_270--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_002686_270--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_002686_270--Hb_000975_290 Hb_001454_140 Hb_001454_140 Hb_002686_270--Hb_001454_140 Hb_001473_130 Hb_001473_130 Hb_002025_320--Hb_001473_130 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_000983_100 Hb_000983_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000700_090--Hb_000696_110 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_005245_090 Hb_005245_090 Hb_005941_010--Hb_005245_090 Hb_004242_100 Hb_004242_100 Hb_005941_010--Hb_004242_100 Hb_003050_040 Hb_003050_040 Hb_005941_010--Hb_003050_040 Hb_005941_010--Hb_000696_110 Hb_000984_190 Hb_000984_190 Hb_005941_010--Hb_000984_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.061 43.8811 12.6166 29.8654 141.675 239.707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
234.664 138.786 198.724 65.1066 28.4126

CAGE analysis