Hb_000152_150

Information

Type -
Description -
Location Contig152: 115379-116755
Sequence    

Annotation

kegg
ID rcu:RCOM_1498600
description hypothetical protein
nr
ID XP_012090371.1
description PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26201 PE=4 SV=1
Gene Ontology
ID GO:0016020
description embryo-specific family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12955: 115247-116308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_150 0.0 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
2 Hb_000152_760 0.0815837393 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006538_130 0.1310127162 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
4 Hb_006132_040 0.1318317943 - - hypothetical protein JCGZ_14390 [Jatropha curcas]
5 Hb_002107_060 0.1319625704 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
6 Hb_000187_030 0.1374593661 - - PREDICTED: cyclin-D4-1-like isoform X2 [Jatropha curcas]
7 Hb_003228_030 0.142264465 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
8 Hb_004236_030 0.1436603717 - - unknown [Lotus japonicus]
9 Hb_011631_010 0.1446828672 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
10 Hb_000291_030 0.1461051731 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Eucalyptus grandis]
11 Hb_090782_010 0.1472614184 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
12 Hb_005499_010 0.1482959143 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
13 Hb_000890_010 0.148774237 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000375_290 0.1488933962 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_013405_150 0.1493412222 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
16 Hb_091226_010 0.1509495543 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
17 Hb_002311_140 0.1514032612 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
18 Hb_000045_260 0.1523215967 - - protein with unknown function [Ricinus communis]
19 Hb_000979_060 0.1531888808 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
20 Hb_000011_050 0.154945033 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]

Gene co-expression network

sample Hb_000152_150 Hb_000152_150 Hb_000152_760 Hb_000152_760 Hb_000152_150--Hb_000152_760 Hb_006538_130 Hb_006538_130 Hb_000152_150--Hb_006538_130 Hb_006132_040 Hb_006132_040 Hb_000152_150--Hb_006132_040 Hb_002107_060 Hb_002107_060 Hb_000152_150--Hb_002107_060 Hb_000187_030 Hb_000187_030 Hb_000152_150--Hb_000187_030 Hb_003228_030 Hb_003228_030 Hb_000152_150--Hb_003228_030 Hb_002478_040 Hb_002478_040 Hb_000152_760--Hb_002478_040 Hb_010368_080 Hb_010368_080 Hb_000152_760--Hb_010368_080 Hb_000152_760--Hb_006132_040 Hb_091226_010 Hb_091226_010 Hb_000152_760--Hb_091226_010 Hb_000979_060 Hb_000979_060 Hb_000152_760--Hb_000979_060 Hb_000375_290 Hb_000375_290 Hb_006538_130--Hb_000375_290 Hb_008695_090 Hb_008695_090 Hb_006538_130--Hb_008695_090 Hb_000048_080 Hb_000048_080 Hb_006538_130--Hb_000048_080 Hb_000227_270 Hb_000227_270 Hb_006538_130--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_006538_130--Hb_023226_070 Hb_004635_030 Hb_004635_030 Hb_006538_130--Hb_004635_030 Hb_005610_080 Hb_005610_080 Hb_006132_040--Hb_005610_080 Hb_000890_010 Hb_000890_010 Hb_006132_040--Hb_000890_010 Hb_004236_030 Hb_004236_030 Hb_006132_040--Hb_004236_030 Hb_003992_180 Hb_003992_180 Hb_006132_040--Hb_003992_180 Hb_000227_310 Hb_000227_310 Hb_006132_040--Hb_000227_310 Hb_008165_030 Hb_008165_030 Hb_006132_040--Hb_008165_030 Hb_002897_050 Hb_002897_050 Hb_002107_060--Hb_002897_050 Hb_011631_010 Hb_011631_010 Hb_002107_060--Hb_011631_010 Hb_000084_240 Hb_000084_240 Hb_002107_060--Hb_000084_240 Hb_000045_260 Hb_000045_260 Hb_002107_060--Hb_000045_260 Hb_000638_280 Hb_000638_280 Hb_002107_060--Hb_000638_280 Hb_002107_060--Hb_000375_290 Hb_004724_220 Hb_004724_220 Hb_000187_030--Hb_004724_220 Hb_000617_310 Hb_000617_310 Hb_000187_030--Hb_000617_310 Hb_006261_090 Hb_006261_090 Hb_000187_030--Hb_006261_090 Hb_004648_090 Hb_004648_090 Hb_000187_030--Hb_004648_090 Hb_001307_190 Hb_001307_190 Hb_000187_030--Hb_001307_190 Hb_005054_310 Hb_005054_310 Hb_003228_030--Hb_005054_310 Hb_000336_110 Hb_000336_110 Hb_003228_030--Hb_000336_110 Hb_003228_030--Hb_005610_080 Hb_003228_030--Hb_000890_010 Hb_003228_030--Hb_006132_040 Hb_003228_030--Hb_000227_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.214 88.1358 83.1451 23.4694 37.2122 9.41006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0476 19.9022 10.5854 13.1731 16.0116

CAGE analysis