Hb_000152_180

Information

Type -
Description -
Location Contig152: 140465-144234
Sequence    

Annotation

kegg
ID rcu:RCOM_1498630
description hypothetical protein
nr
ID XP_012090374.1
description PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
swissprot
ID Q9FLI7
description CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET PE=1 SV=1
trembl
ID A0A067JHV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26204 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cdgsh iron-sulfur domain-containing protein neet

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12957: 140434-144150 , PASA_asmbl_12958: 143256-143635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_180 0.0 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
2 Hb_000312_070 0.0965178384 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011476_030 0.1125584573 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
4 Hb_005332_080 0.1184683612 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
5 Hb_009771_060 0.1206534273 - - PREDICTED: 30S ribosomal protein S31, chloroplastic [Populus euphratica]
6 Hb_001541_110 0.1275290414 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_007217_010 0.1278122975 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
8 Hb_000284_130 0.1295443735 - - sodium-bile acid cotransporter, putative [Ricinus communis]
9 Hb_017193_010 0.1296548481 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
10 Hb_000574_470 0.1315995374 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000189_150 0.1321275666 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
12 Hb_000331_420 0.1323962361 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
13 Hb_021732_010 0.1371942037 - - biotin carboxylase [Vernicia fordii]
14 Hb_001623_500 0.1380688115 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
15 Hb_007451_040 0.1386291665 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
16 Hb_008375_030 0.1393717367 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
17 Hb_002027_320 0.1406443756 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
18 Hb_001102_050 0.1407277098 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
19 Hb_002871_040 0.1415529568 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
20 Hb_007263_010 0.1440106972 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000152_180 Hb_000152_180 Hb_000312_070 Hb_000312_070 Hb_000152_180--Hb_000312_070 Hb_011476_030 Hb_011476_030 Hb_000152_180--Hb_011476_030 Hb_005332_080 Hb_005332_080 Hb_000152_180--Hb_005332_080 Hb_009771_060 Hb_009771_060 Hb_000152_180--Hb_009771_060 Hb_001541_110 Hb_001541_110 Hb_000152_180--Hb_001541_110 Hb_007217_010 Hb_007217_010 Hb_000152_180--Hb_007217_010 Hb_017193_010 Hb_017193_010 Hb_000312_070--Hb_017193_010 Hb_000312_070--Hb_009771_060 Hb_000392_450 Hb_000392_450 Hb_000312_070--Hb_000392_450 Hb_001102_050 Hb_001102_050 Hb_000312_070--Hb_001102_050 Hb_007263_010 Hb_007263_010 Hb_000312_070--Hb_007263_010 Hb_011476_030--Hb_007217_010 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_000212_250 Hb_000212_250 Hb_011476_030--Hb_000212_250 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_002915_010 Hb_002915_010 Hb_011476_030--Hb_002915_010 Hb_005665_090 Hb_005665_090 Hb_011476_030--Hb_005665_090 Hb_000537_100 Hb_000537_100 Hb_005332_080--Hb_000537_100 Hb_000318_220 Hb_000318_220 Hb_005332_080--Hb_000318_220 Hb_029622_120 Hb_029622_120 Hb_005332_080--Hb_029622_120 Hb_002871_040 Hb_002871_040 Hb_005332_080--Hb_002871_040 Hb_002218_020 Hb_002218_020 Hb_005332_080--Hb_002218_020 Hb_021576_150 Hb_021576_150 Hb_005332_080--Hb_021576_150 Hb_003077_150 Hb_003077_150 Hb_009771_060--Hb_003077_150 Hb_009771_060--Hb_007263_010 Hb_002194_050 Hb_002194_050 Hb_009771_060--Hb_002194_050 Hb_009771_060--Hb_005332_080 Hb_007451_040 Hb_007451_040 Hb_009771_060--Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_000003_780 Hb_000003_780 Hb_001541_110--Hb_000003_780 Hb_001587_180 Hb_001587_180 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_007217_010--Hb_000212_250 Hb_006588_190 Hb_006588_190 Hb_007217_010--Hb_006588_190 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_007217_010--Hb_000392_450 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1055 36.4895 223.171 34.0599 21.5102 16.0665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.846 51.1176 34.9397 50.3064 117.372

CAGE analysis