Hb_000152_220

Information

Type -
Description -
Location Contig152: 180626-182191
Sequence    

Annotation

kegg
ID rcu:RCOM_1498780
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_002510899.1
description acc synthase, putative [Ricinus communis]
swissprot
ID Q8GYY0
description Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2
trembl
ID B9R9M4
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1498780 PE=3 SV=1
Gene Ontology
ID GO:0008483
description 1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_220 0.0 - - acc synthase, putative [Ricinus communis]
2 Hb_000850_040 0.2136369519 - - conserved hypothetical protein [Ricinus communis]
3 Hb_183557_010 0.2208507409 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
4 Hb_003925_070 0.2270993102 - - ATOZI1, putative [Ricinus communis]
5 Hb_007441_050 0.2348579122 - - unknown [Medicago truncatula]
6 Hb_106411_010 0.2406163457 - - Ribosomal protein S25 family protein [Theobroma cacao]
7 Hb_001752_040 0.2417549427 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
8 Hb_076874_010 0.250474377 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
9 Hb_002508_010 0.2510669372 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
10 Hb_004935_080 0.2545095144 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
11 Hb_002530_010 0.2553522193 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
12 Hb_003038_220 0.258877931 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
13 Hb_001767_120 0.2613216007 - - -
14 Hb_000025_050 0.2613670358 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
15 Hb_001545_050 0.2623519536 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
16 Hb_000125_040 0.2630361293 - - -
17 Hb_142751_010 0.266240921 - - conserved hypothetical protein [Ricinus communis]
18 Hb_070469_010 0.2667705285 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
19 Hb_000429_250 0.2695004822 - - hypothetical protein L484_000744 [Morus notabilis]
20 Hb_000028_060 0.2713295502 - - -

Gene co-expression network

sample Hb_000152_220 Hb_000152_220 Hb_000850_040 Hb_000850_040 Hb_000152_220--Hb_000850_040 Hb_183557_010 Hb_183557_010 Hb_000152_220--Hb_183557_010 Hb_003925_070 Hb_003925_070 Hb_000152_220--Hb_003925_070 Hb_007441_050 Hb_007441_050 Hb_000152_220--Hb_007441_050 Hb_106411_010 Hb_106411_010 Hb_000152_220--Hb_106411_010 Hb_001752_040 Hb_001752_040 Hb_000152_220--Hb_001752_040 Hb_000850_040--Hb_183557_010 Hb_003633_040 Hb_003633_040 Hb_000850_040--Hb_003633_040 Hb_075764_010 Hb_075764_010 Hb_000850_040--Hb_075764_010 Hb_026228_020 Hb_026228_020 Hb_000850_040--Hb_026228_020 Hb_004718_040 Hb_004718_040 Hb_000850_040--Hb_004718_040 Hb_000850_040--Hb_106411_010 Hb_003536_110 Hb_003536_110 Hb_183557_010--Hb_003536_110 Hb_183557_010--Hb_106411_010 Hb_076875_020 Hb_076875_020 Hb_183557_010--Hb_076875_020 Hb_002192_090 Hb_002192_090 Hb_183557_010--Hb_002192_090 Hb_001124_020 Hb_001124_020 Hb_183557_010--Hb_001124_020 Hb_076874_010 Hb_076874_010 Hb_003925_070--Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_003925_070--Hb_000025_050 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_086022_010 Hb_086022_010 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_000317_130 Hb_000317_130 Hb_007441_050--Hb_000317_130 Hb_007441_050--Hb_003633_040 Hb_019053_010 Hb_019053_010 Hb_007441_050--Hb_019053_010 Hb_051424_010 Hb_051424_010 Hb_007441_050--Hb_051424_010 Hb_000082_020 Hb_000082_020 Hb_007441_050--Hb_000082_020 Hb_106411_010--Hb_000025_050 Hb_106411_010--Hb_076874_010 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_002411_130 Hb_002411_130 Hb_001752_040--Hb_002411_130 Hb_001752_040--Hb_000025_050 Hb_001767_120 Hb_001767_120 Hb_001752_040--Hb_001767_120 Hb_019813_010 Hb_019813_010 Hb_001752_040--Hb_019813_010 Hb_000803_110 Hb_000803_110 Hb_001752_040--Hb_000803_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21872 0.212078 0.174916 0.421147 0.252965 0.484897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.35095 0.105061 0.0474772 0

CAGE analysis