Hb_000152_320

Information

Type -
Description -
Location Contig152: 273602-280046
Sequence    

Annotation

kegg
ID rcu:RCOM_1498960
description hypothetical protein
nr
ID XP_002510907.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VYS5
description Protein trichome birefringence-like 18 OS=Arabidopsis thaliana GN=TBL18 PE=2 SV=1
trembl
ID B9R9N2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1498960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12977: 274222-279575 , PASA_asmbl_12978: 273967-274205 , PASA_asmbl_12980: 273721-274534 , PASA_asmbl_12981: 279728-279998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000505_150 0.0899729871 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
3 Hb_000140_380 0.1028070321 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
4 Hb_004993_060 0.1045969838 - - -
5 Hb_000753_230 0.1061201539 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
6 Hb_000252_100 0.1064774838 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_000173_470 0.1076467445 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
8 Hb_020178_040 0.1087611249 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001898_080 0.1098801992 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
10 Hb_000109_180 0.1103934 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
11 Hb_000890_150 0.110711107 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
12 Hb_007044_050 0.1124497479 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
13 Hb_007386_040 0.1143795314 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
14 Hb_000951_130 0.1150195453 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
15 Hb_000012_310 0.1161299725 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
16 Hb_146051_010 0.1170035554 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_000787_020 0.1173281087 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000853_200 0.1175807172 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
19 Hb_000172_100 0.119002233 - - PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal [Jatropha curcas]
20 Hb_024404_020 0.1193762202 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_320 Hb_000152_320 Hb_000505_150 Hb_000505_150 Hb_000152_320--Hb_000505_150 Hb_000140_380 Hb_000140_380 Hb_000152_320--Hb_000140_380 Hb_004993_060 Hb_004993_060 Hb_000152_320--Hb_004993_060 Hb_000753_230 Hb_000753_230 Hb_000152_320--Hb_000753_230 Hb_000252_100 Hb_000252_100 Hb_000152_320--Hb_000252_100 Hb_000173_470 Hb_000173_470 Hb_000152_320--Hb_000173_470 Hb_000505_150--Hb_000252_100 Hb_000505_150--Hb_000140_380 Hb_010344_050 Hb_010344_050 Hb_000505_150--Hb_010344_050 Hb_007386_040 Hb_007386_040 Hb_000505_150--Hb_007386_040 Hb_000853_200 Hb_000853_200 Hb_000505_150--Hb_000853_200 Hb_001898_080 Hb_001898_080 Hb_000505_150--Hb_001898_080 Hb_000140_380--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000173_410 Hb_000173_410 Hb_000140_380--Hb_000173_410 Hb_000890_150 Hb_000890_150 Hb_000140_380--Hb_000890_150 Hb_000454_090 Hb_000454_090 Hb_000140_380--Hb_000454_090 Hb_031910_020 Hb_031910_020 Hb_004993_060--Hb_031910_020 Hb_000549_040 Hb_000549_040 Hb_004993_060--Hb_000549_040 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_000603_080 Hb_000603_080 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000753_230--Hb_000173_470 Hb_003688_180 Hb_003688_180 Hb_000753_230--Hb_003688_180 Hb_066920_030 Hb_066920_030 Hb_000753_230--Hb_066920_030 Hb_038574_010 Hb_038574_010 Hb_000753_230--Hb_038574_010 Hb_017387_010 Hb_017387_010 Hb_000753_230--Hb_017387_010 Hb_020178_040 Hb_020178_040 Hb_000753_230--Hb_020178_040 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_000173_470--Hb_023771_010 Hb_000173_470--Hb_000890_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09551 7.88416 3.98027 10.3723 2.54976 2.59121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.83089 5.41004 10.3469 7.73126 4.44046

CAGE analysis