Hb_000152_420

Information

Type -
Description -
Location Contig152: 367115-372713
Sequence    

Annotation

kegg
ID tcc:TCM_005525
description Ribosomal protein S13A
nr
ID KJB09907.1
description hypothetical protein B456_001G174200, partial [Gossypium raimondii]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID A0A0D2LZT7
description Gossypium raimondii chromosome 1, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_001G174200 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12995: 367707-372703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_420 0.0 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
2 Hb_001369_640 0.0650989776 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
3 Hb_000792_130 0.0719875518 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
4 Hb_009793_010 0.0731169674 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
5 Hb_002289_120 0.0731699084 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
6 Hb_004157_030 0.0799237267 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
7 Hb_000172_320 0.082026874 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
8 Hb_001814_050 0.0834304967 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_001214_160 0.0842506876 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_000506_070 0.0865534194 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_000102_020 0.0866724547 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
12 Hb_000656_170 0.0870775197 - - lsm1, putative [Ricinus communis]
13 Hb_001476_080 0.0874348837 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
14 Hb_009051_030 0.0889055523 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
15 Hb_033153_090 0.0895462026 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
16 Hb_001314_100 0.0912320555 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
17 Hb_003226_210 0.0927925215 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
18 Hb_000926_300 0.0931447567 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
19 Hb_006816_530 0.0935200608 - - 60S ribosomal protein L18, putative [Ricinus communis]
20 Hb_003943_130 0.0954688129 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_420 Hb_000152_420 Hb_001369_640 Hb_001369_640 Hb_000152_420--Hb_001369_640 Hb_000792_130 Hb_000792_130 Hb_000152_420--Hb_000792_130 Hb_009793_010 Hb_009793_010 Hb_000152_420--Hb_009793_010 Hb_002289_120 Hb_002289_120 Hb_000152_420--Hb_002289_120 Hb_004157_030 Hb_004157_030 Hb_000152_420--Hb_004157_030 Hb_000172_320 Hb_000172_320 Hb_000152_420--Hb_000172_320 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_003943_130 Hb_003943_130 Hb_001369_640--Hb_003943_130 Hb_001314_100 Hb_001314_100 Hb_001369_640--Hb_001314_100 Hb_001369_640--Hb_002289_120 Hb_134949_020 Hb_134949_020 Hb_001369_640--Hb_134949_020 Hb_000102_020 Hb_000102_020 Hb_000792_130--Hb_000102_020 Hb_000656_170 Hb_000656_170 Hb_000792_130--Hb_000656_170 Hb_005054_350 Hb_005054_350 Hb_000792_130--Hb_005054_350 Hb_002662_030 Hb_002662_030 Hb_000792_130--Hb_002662_030 Hb_000982_090 Hb_000982_090 Hb_000792_130--Hb_000982_090 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_001814_070 Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_003878_010 Hb_003878_010 Hb_002289_120--Hb_003878_010 Hb_003226_100 Hb_003226_100 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010 Hb_002056_050 Hb_002056_050 Hb_000172_320--Hb_002056_050 Hb_002043_130 Hb_002043_130 Hb_000172_320--Hb_002043_130 Hb_000920_110 Hb_000920_110 Hb_000172_320--Hb_000920_110 Hb_002078_140 Hb_002078_140 Hb_000172_320--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_000172_320--Hb_011671_100 Hb_015279_010 Hb_015279_010 Hb_000172_320--Hb_015279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.9943 46.5503 63.778 80.4567 54.9846 114.028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.313 230.719 75.1166 61.9239 25.7239

CAGE analysis