Hb_000152_430

Information

Type -
Description -
Location Contig152: 380287-382370
Sequence    

Annotation

kegg
ID rcu:RCOM_1499710
description 40S ribosomal protein S20, putative
nr
ID XP_012090410.1
description PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
swissprot
ID P49200
description 40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2
trembl
ID A0A067JES0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26227 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s20-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12996: 380332-382416
cDNA
(Sanger)
(ID:Location)		 003_G06.ab1: 380359-382416 , 004_F24.ab1: 380334-382416 , 005_G11.ab1: 380363-382412 , 008_G13.ab1: 380436-382416 , 018_B21.ab1: 380334-382416 , 050_B15.ab1: 380359-382416 , 050_H16.ab1: 380359-382416

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_430 0.0 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
2 Hb_011139_020 0.0498095371 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
3 Hb_000318_380 0.0616537857 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
4 Hb_001019_090 0.0643058075 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_025193_050 0.0717731968 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
6 Hb_024650_050 0.073110352 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_000928_240 0.0796865305 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
8 Hb_007747_090 0.0819227811 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
9 Hb_000089_130 0.0820163388 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
10 Hb_012515_010 0.0826118857 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_011161_040 0.083602843 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
12 Hb_000189_530 0.0852529109 - - 40S ribosomal protein S24B [Hevea brasiliensis]
13 Hb_000317_430 0.0852873893 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
14 Hb_001804_040 0.0865712799 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003125_040 0.0870226444 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
16 Hb_118419_020 0.0877249387 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
17 Hb_000956_010 0.0892658202 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
18 Hb_007193_100 0.0894485562 - - syntaxin family protein [Populus trichocarpa]
19 Hb_004662_030 0.0899680494 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
20 Hb_001584_070 0.0902116365 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000152_430 Hb_000152_430 Hb_011139_020 Hb_011139_020 Hb_000152_430--Hb_011139_020 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_001019_090 Hb_001019_090 Hb_000152_430--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_000152_430--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_012515_010 Hb_012515_010 Hb_011139_020--Hb_012515_010 Hb_011139_020--Hb_025193_050 Hb_011139_020--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_011139_020--Hb_004595_020 Hb_001840_120 Hb_001840_120 Hb_011139_020--Hb_001840_120 Hb_001824_070 Hb_001824_070 Hb_000318_380--Hb_001824_070 Hb_007747_090 Hb_007747_090 Hb_000318_380--Hb_007747_090 Hb_000318_380--Hb_000928_240 Hb_001477_110 Hb_001477_110 Hb_000318_380--Hb_001477_110 Hb_000318_380--Hb_011139_020 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_000617_320 Hb_000617_320 Hb_001019_090--Hb_000617_320 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_025193_050--Hb_012515_010 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_004595_020 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_000015_210 Hb_000015_210 Hb_024650_050--Hb_000015_210 Hb_024650_050--Hb_001019_090 Hb_024650_050--Hb_012515_010 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_000928_240--Hb_001824_070 Hb_003878_190 Hb_003878_190 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
327.599 62.4694 54.8336 93.4218 397.826 546.515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
466.093 652.697 329.963 140.896 47.2503

CAGE analysis