Hb_000152_480

Information

Type -
Description -
Location Contig152: 409963-416775
Sequence    

Annotation

kegg
ID rcu:RCOM_1499930
description hypothetical protein
nr
ID XP_012090413.1
description PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
swissprot
ID F4KDA6
description Protein LOW PSII ACCUMULATION 2, chloroplastic OS=Arabidopsis thaliana GN=LPA2 PE=1 SV=1
trembl
ID A0A067JS76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26230 PE=4 SV=1
Gene Ontology
ID GO:0044424
description protein low psii accumulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13002: 409999-416564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_480 0.0 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
2 Hb_000175_050 0.0972299787 - - -
3 Hb_005489_090 0.1035242192 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
4 Hb_000112_060 0.1059551728 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
5 Hb_000042_290 0.1064272278 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_007426_170 0.1105389829 transcription factor TF Family: TCP -
7 Hb_036790_120 0.1198675494 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
8 Hb_003935_080 0.1200379187 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
9 Hb_000548_060 0.1209281711 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
10 Hb_000594_100 0.1215065171 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
11 Hb_006829_080 0.1229530189 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
12 Hb_003171_030 0.1240520211 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
13 Hb_011053_030 0.1241668269 - - -
14 Hb_010128_020 0.1245873296 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
15 Hb_001294_030 0.1260562191 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
16 Hb_001124_180 0.1263720452 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
17 Hb_000983_070 0.1281158468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000059_270 0.1288983986 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
19 Hb_126917_010 0.1313429853 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
20 Hb_002053_010 0.1338951888 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000152_480 Hb_000152_480 Hb_000175_050 Hb_000175_050 Hb_000152_480--Hb_000175_050 Hb_005489_090 Hb_005489_090 Hb_000152_480--Hb_005489_090 Hb_000112_060 Hb_000112_060 Hb_000152_480--Hb_000112_060 Hb_000042_290 Hb_000042_290 Hb_000152_480--Hb_000042_290 Hb_007426_170 Hb_007426_170 Hb_000152_480--Hb_007426_170 Hb_036790_120 Hb_036790_120 Hb_000152_480--Hb_036790_120 Hb_011053_030 Hb_011053_030 Hb_000175_050--Hb_011053_030 Hb_007904_040 Hb_007904_040 Hb_000175_050--Hb_007904_040 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_000175_050--Hb_005489_090 Hb_000032_140 Hb_000032_140 Hb_000175_050--Hb_000032_140 Hb_001124_180 Hb_001124_180 Hb_005489_090--Hb_001124_180 Hb_003935_080 Hb_003935_080 Hb_005489_090--Hb_003935_080 Hb_000594_100 Hb_000594_100 Hb_005489_090--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_001792_030 Hb_001792_030 Hb_005489_090--Hb_001792_030 Hb_010128_020 Hb_010128_020 Hb_000112_060--Hb_010128_020 Hb_000112_060--Hb_036790_120 Hb_000112_060--Hb_007426_170 Hb_005276_010 Hb_005276_010 Hb_000112_060--Hb_005276_010 Hb_003029_020 Hb_003029_020 Hb_000112_060--Hb_003029_020 Hb_000042_290--Hb_001124_180 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_000042_290--Hb_005489_090 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_000005_130 Hb_000005_130 Hb_007426_170--Hb_000005_130 Hb_001959_060 Hb_001959_060 Hb_007426_170--Hb_001959_060 Hb_006829_080 Hb_006829_080 Hb_007426_170--Hb_006829_080 Hb_000548_060 Hb_000548_060 Hb_007426_170--Hb_000548_060 Hb_000976_190 Hb_000976_190 Hb_007426_170--Hb_000976_190 Hb_000402_170 Hb_000402_170 Hb_036790_120--Hb_000402_170 Hb_036790_120--Hb_000548_060 Hb_000977_270 Hb_000977_270 Hb_036790_120--Hb_000977_270 Hb_000189_250 Hb_000189_250 Hb_036790_120--Hb_000189_250 Hb_000684_280 Hb_000684_280 Hb_036790_120--Hb_000684_280 Hb_036790_120--Hb_010128_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28254 2.60476 12.5693 7.46544 1.05728 1.99836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0339 7.95413 2.65625 2.51085 24.7893

CAGE analysis