Hb_000152_490

Information

Type -
Description -
Location Contig152: 417121-422379
Sequence    

Annotation

kegg
ID rcu:RCOM_1499940
description hydrolase, putative
nr
ID XP_012090414.1
description PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
swissprot
ID Q84KJ5
description Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2
trembl
ID A0A067JQW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26231 PE=4 SV=1
Gene Ontology
ID GO:0016787
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13003: 417202-419041 , PASA_asmbl_13004: 419718-420455 , PASA_asmbl_13005: 420733-422320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_490 0.0 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
2 Hb_005333_200 0.1144588107 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
3 Hb_002759_120 0.1175499921 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000108_150 0.1187643252 - - alpha/beta hydrolase, putative [Ricinus communis]
5 Hb_001269_500 0.1204846216 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
6 Hb_003752_090 0.1209572942 - - chitinase, putative [Ricinus communis]
7 Hb_000465_440 0.1214766045 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
8 Hb_003549_140 0.1223648604 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000473_050 0.1277650491 - - chromatin regulatory protein sir2, putative [Ricinus communis]
10 Hb_007904_060 0.1312546178 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]
11 Hb_003948_020 0.1313915819 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
12 Hb_000045_050 0.1317336778 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
13 Hb_000922_340 0.1324503222 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
14 Hb_006829_080 0.1345911486 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
15 Hb_000061_250 0.1351778855 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
16 Hb_000336_200 0.1355193004 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_005563_010 0.1378594152 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
18 Hb_009288_040 0.138249961 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
19 Hb_000665_270 0.1400267083 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
20 Hb_003994_080 0.140177004 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_490 Hb_000152_490 Hb_005333_200 Hb_005333_200 Hb_000152_490--Hb_005333_200 Hb_002759_120 Hb_002759_120 Hb_000152_490--Hb_002759_120 Hb_000108_150 Hb_000108_150 Hb_000152_490--Hb_000108_150 Hb_001269_500 Hb_001269_500 Hb_000152_490--Hb_001269_500 Hb_003752_090 Hb_003752_090 Hb_000152_490--Hb_003752_090 Hb_000465_440 Hb_000465_440 Hb_000152_490--Hb_000465_440 Hb_005333_200--Hb_003752_090 Hb_003209_010 Hb_003209_010 Hb_005333_200--Hb_003209_010 Hb_004117_040 Hb_004117_040 Hb_005333_200--Hb_004117_040 Hb_005333_200--Hb_000465_440 Hb_001793_020 Hb_001793_020 Hb_005333_200--Hb_001793_020 Hb_002759_120--Hb_003752_090 Hb_000096_190 Hb_000096_190 Hb_002759_120--Hb_000096_190 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_042083_040 Hb_042083_040 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_001649_030 Hb_001649_030 Hb_001269_500--Hb_001649_030 Hb_000336_200 Hb_000336_200 Hb_001269_500--Hb_000336_200 Hb_009687_020 Hb_009687_020 Hb_001269_500--Hb_009687_020 Hb_000665_270 Hb_000665_270 Hb_001269_500--Hb_000665_270 Hb_001269_500--Hb_000264_280 Hb_006198_130 Hb_006198_130 Hb_001269_500--Hb_006198_130 Hb_009288_040 Hb_009288_040 Hb_003752_090--Hb_009288_040 Hb_003752_090--Hb_003994_080 Hb_003020_250 Hb_003020_250 Hb_003752_090--Hb_003020_250 Hb_005665_090 Hb_005665_090 Hb_003752_090--Hb_005665_090 Hb_003752_090--Hb_001649_030 Hb_000465_440--Hb_000665_270 Hb_000465_440--Hb_009288_040 Hb_000465_440--Hb_003752_090 Hb_000465_440--Hb_000336_200 Hb_000465_440--Hb_001793_020 Hb_000465_440--Hb_001649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73362 1.89418 17.5736 12.8635 2.35615 3.8365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82021 3.34194 2.02163 1.50554 19.0748

CAGE analysis