Hb_000152_500

Information

Type -
Description -
Location Contig152: 422426-430359
Sequence    

Annotation

kegg
ID rcu:RCOM_1499960
description mitochondrial intermediate peptidase, putative (EC:3.4.24.59)
nr
ID XP_012090416.1
description PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
swissprot
ID F4KDA5
description Probable mitochondrial intermediate peptidase, mitochondrial OS=Arabidopsis thaliana GN=MIP PE=3 SV=1
trembl
ID A0A067JES5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26232 PE=3 SV=1
Gene Ontology
ID GO:0009535
description probable mitochondrial intermediate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13006: 422567-426140 , PASA_asmbl_13007: 422947-424251 , PASA_asmbl_13008: 428200-430123 , PASA_asmbl_13009: 428200-429505
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_500 0.0 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
2 Hb_003151_040 0.0539954152 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
3 Hb_000373_070 0.0632961229 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
4 Hb_001470_030 0.0651525619 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
5 Hb_001133_120 0.0654968221 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
6 Hb_006059_050 0.0660633739 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
7 Hb_027380_050 0.0690954601 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
8 Hb_005846_040 0.0724630009 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
9 Hb_005271_220 0.0731169086 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
10 Hb_003125_120 0.0737342625 - - PREDICTED: TITAN-like protein [Jatropha curcas]
11 Hb_002303_070 0.0741273685 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
12 Hb_000403_050 0.0752172369 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
13 Hb_000656_240 0.0755729565 - - proteasome subunit alpha type, putative [Ricinus communis]
14 Hb_000215_110 0.0756402243 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
15 Hb_007423_040 0.0760336894 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
16 Hb_001599_040 0.0768783227 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
17 Hb_000948_160 0.0795579269 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
18 Hb_008013_050 0.0798545405 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
19 Hb_000529_030 0.0799603033 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000217_030 0.080599182 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000152_500 Hb_000152_500 Hb_003151_040 Hb_003151_040 Hb_000152_500--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_000152_500--Hb_000373_070 Hb_001470_030 Hb_001470_030 Hb_000152_500--Hb_001470_030 Hb_001133_120 Hb_001133_120 Hb_000152_500--Hb_001133_120 Hb_006059_050 Hb_006059_050 Hb_000152_500--Hb_006059_050 Hb_027380_050 Hb_027380_050 Hb_000152_500--Hb_027380_050 Hb_005846_040 Hb_005846_040 Hb_003151_040--Hb_005846_040 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_003151_040--Hb_000373_070 Hb_003151_040--Hb_006059_050 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000331_550 Hb_000331_550 Hb_000373_070--Hb_000331_550 Hb_002078_350 Hb_002078_350 Hb_000373_070--Hb_002078_350 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_001470_030--Hb_002078_350 Hb_003938_090 Hb_003938_090 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_001470_030--Hb_000373_070 Hb_000039_220 Hb_000039_220 Hb_001133_120--Hb_000039_220 Hb_001133_120--Hb_000215_110 Hb_000667_070 Hb_000667_070 Hb_001133_120--Hb_000667_070 Hb_001599_040 Hb_001599_040 Hb_001133_120--Hb_001599_040 Hb_002303_070 Hb_002303_070 Hb_001133_120--Hb_002303_070 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_172426_040 Hb_172426_040 Hb_006059_050--Hb_172426_040 Hb_006059_050--Hb_000373_070 Hb_006059_050--Hb_005846_040 Hb_001245_100 Hb_001245_100 Hb_027380_050--Hb_001245_100 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_005779_060 Hb_005779_060 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_027380_050--Hb_001030_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95706 5.69305 5.94213 5.39596 4.59333 6.72763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.43076 11.5987 5.35082 5.99044 5.0264

CAGE analysis