Hb_000152_550

Information

Type -
Description -
Location Contig152: 465053-468009
Sequence    

Annotation

kegg
ID vvi:100248550
description adenylate kinase-like
nr
ID XP_002263160.1
description PREDICTED: UMP-CMP kinase [Vitis vinifera]
swissprot
ID O24464
description UMP-CMP kinase OS=Prunus armeniaca PE=2 SV=1
trembl
ID D7T276
description UMP-CMP kinase OS=Vitis vinifera GN=VIT_16s0022g00980 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ump-cmp kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13015: 465153-468455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_550 0.0 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
2 Hb_002207_110 0.078749834 - - -
3 Hb_005400_030 0.0829598909 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
4 Hb_004032_100 0.0858075713 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
5 Hb_003964_100 0.0920391097 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
6 Hb_101705_030 0.0922559011 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
7 Hb_029866_070 0.0924836125 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
8 Hb_004306_020 0.0942152066 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
9 Hb_000024_080 0.0952091633 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
10 Hb_000086_070 0.0966085549 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
11 Hb_012799_160 0.0968834946 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
12 Hb_005867_020 0.0987586136 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
13 Hb_031089_040 0.1002688308 - - thioredoxin H-type 1 [Hevea brasiliensis]
14 Hb_002016_120 0.1007280117 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
15 Hb_010180_020 0.1010060998 - - hypothetical protein glysoja_030394 [Glycine soja]
16 Hb_000087_020 0.1022948537 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
17 Hb_000656_170 0.1024873728 - - lsm1, putative [Ricinus communis]
18 Hb_000083_170 0.1028537436 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
19 Hb_004502_020 0.1039711231 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
20 Hb_001842_040 0.104408838 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]

Gene co-expression network

sample Hb_000152_550 Hb_000152_550 Hb_002207_110 Hb_002207_110 Hb_000152_550--Hb_002207_110 Hb_005400_030 Hb_005400_030 Hb_000152_550--Hb_005400_030 Hb_004032_100 Hb_004032_100 Hb_000152_550--Hb_004032_100 Hb_003964_100 Hb_003964_100 Hb_000152_550--Hb_003964_100 Hb_101705_030 Hb_101705_030 Hb_000152_550--Hb_101705_030 Hb_029866_070 Hb_029866_070 Hb_000152_550--Hb_029866_070 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_004032_010 Hb_004032_010 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_031089_040 Hb_031089_040 Hb_002207_110--Hb_031089_040 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120 Hb_005400_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_005400_030--Hb_007735_030 Hb_000086_550 Hb_000086_550 Hb_005400_030--Hb_000086_550 Hb_000024_080 Hb_000024_080 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_003964_100--Hb_000751_130 Hb_003964_100--Hb_029866_070 Hb_006846_060 Hb_006846_060 Hb_003964_100--Hb_006846_060 Hb_024714_010 Hb_024714_010 Hb_003964_100--Hb_024714_010 Hb_003964_100--Hb_004032_100 Hb_001829_060 Hb_001829_060 Hb_003964_100--Hb_001829_060 Hb_002874_190 Hb_002874_190 Hb_101705_030--Hb_002874_190 Hb_006117_070 Hb_006117_070 Hb_101705_030--Hb_006117_070 Hb_002864_050 Hb_002864_050 Hb_101705_030--Hb_002864_050 Hb_158467_010 Hb_158467_010 Hb_101705_030--Hb_158467_010 Hb_001140_060 Hb_001140_060 Hb_101705_030--Hb_001140_060 Hb_001604_080 Hb_001604_080 Hb_101705_030--Hb_001604_080 Hb_000963_180 Hb_000963_180 Hb_029866_070--Hb_000963_180 Hb_008300_010 Hb_008300_010 Hb_029866_070--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_029866_070--Hb_001461_010 Hb_010174_020 Hb_010174_020 Hb_029866_070--Hb_010174_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.57185 1.88309 5.07375 9.29463 6.22394 19.9312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5794 23.4049 13.8622 5.38018 5.75272

CAGE analysis