Hb_000152_580

Information

Type -
Description -
Location Contig152: 493471-497862
Sequence    

Annotation

kegg
ID rcu:RCOM_1500020
description 21 kDa protein precursor, putative
nr
ID XP_012090759.1
description PREDICTED: 21 kDa protein-like [Jatropha curcas]
swissprot
ID Q9LUL8
description Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1
trembl
ID A0A067JEZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26238 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13020: 498458-499374
cDNA
(Sanger)
(ID:Location)		 002_O10.ab1: 495871-496641 , 030_O23r.ab1: 498671-499354 , 048_P20r.ab1: 498566-499354

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_580 0.0 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
2 Hb_001677_070 0.1069240626 - - PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980 [Jatropha curcas]
3 Hb_001102_030 0.1115416153 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_005839_080 0.1217745818 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
5 Hb_000465_110 0.1233964904 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Jatropha curcas]
6 Hb_001921_040 0.1234587183 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
7 Hb_000556_050 0.1247738929 - - -
8 Hb_000005_160 0.1251915373 - - tonoplast intrinsic protein, putative [Ricinus communis]
9 Hb_005198_010 0.1277998437 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
10 Hb_177533_010 0.1336417861 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
11 Hb_004117_060 0.1344828007 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
12 Hb_007741_010 0.1345131341 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
13 Hb_000152_200 0.1351558011 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
14 Hb_007558_060 0.1368429184 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
15 Hb_002235_260 0.1391257174 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_000023_030 0.1395217273 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
17 Hb_007225_010 0.1430874796 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
18 Hb_002045_020 0.1441450775 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
19 Hb_000190_200 0.1449439355 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
20 Hb_000175_110 0.1465043163 - - hypothetical protein JCGZ_06125 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_580 Hb_000152_580 Hb_001677_070 Hb_001677_070 Hb_000152_580--Hb_001677_070 Hb_001102_030 Hb_001102_030 Hb_000152_580--Hb_001102_030 Hb_005839_080 Hb_005839_080 Hb_000152_580--Hb_005839_080 Hb_000465_110 Hb_000465_110 Hb_000152_580--Hb_000465_110 Hb_001921_040 Hb_001921_040 Hb_000152_580--Hb_001921_040 Hb_000556_050 Hb_000556_050 Hb_000152_580--Hb_000556_050 Hb_000175_110 Hb_000175_110 Hb_001677_070--Hb_000175_110 Hb_000243_180 Hb_000243_180 Hb_001677_070--Hb_000243_180 Hb_000563_110 Hb_000563_110 Hb_001677_070--Hb_000563_110 Hb_004117_060 Hb_004117_060 Hb_001677_070--Hb_004117_060 Hb_001677_070--Hb_001921_040 Hb_000023_030 Hb_000023_030 Hb_001677_070--Hb_000023_030 Hb_007558_060 Hb_007558_060 Hb_001102_030--Hb_007558_060 Hb_000984_230 Hb_000984_230 Hb_001102_030--Hb_000984_230 Hb_008642_020 Hb_008642_020 Hb_001102_030--Hb_008642_020 Hb_005170_050 Hb_005170_050 Hb_001102_030--Hb_005170_050 Hb_001102_030--Hb_000175_110 Hb_001519_080 Hb_001519_080 Hb_001102_030--Hb_001519_080 Hb_012084_010 Hb_012084_010 Hb_005839_080--Hb_012084_010 Hb_007632_200 Hb_007632_200 Hb_005839_080--Hb_007632_200 Hb_022406_010 Hb_022406_010 Hb_005839_080--Hb_022406_010 Hb_003964_050 Hb_003964_050 Hb_005839_080--Hb_003964_050 Hb_088118_010 Hb_088118_010 Hb_005839_080--Hb_088118_010 Hb_019762_030 Hb_019762_030 Hb_000465_110--Hb_019762_030 Hb_000853_340 Hb_000853_340 Hb_000465_110--Hb_000853_340 Hb_002235_260 Hb_002235_260 Hb_000465_110--Hb_002235_260 Hb_000465_110--Hb_001921_040 Hb_000465_110--Hb_004117_060 Hb_000173_330 Hb_000173_330 Hb_000465_110--Hb_000173_330 Hb_001921_040--Hb_002235_260 Hb_001921_040--Hb_004117_060 Hb_001926_010 Hb_001926_010 Hb_001921_040--Hb_001926_010 Hb_001921_040--Hb_000243_180 Hb_005198_010 Hb_005198_010 Hb_001921_040--Hb_005198_010 Hb_003226_040 Hb_003226_040 Hb_001921_040--Hb_003226_040 Hb_000556_050--Hb_005198_010 Hb_000005_160 Hb_000005_160 Hb_000556_050--Hb_000005_160 Hb_000152_200 Hb_000152_200 Hb_000556_050--Hb_000152_200 Hb_000556_050--Hb_019762_030 Hb_177533_010 Hb_177533_010 Hb_000556_050--Hb_177533_010 Hb_007741_010 Hb_007741_010 Hb_000556_050--Hb_007741_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.735347 0.0409717 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.025186 0.0651185

CAGE analysis