Hb_000152_600

Information

Type -
Description -
Location Contig152: 501211-503586
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14600g
description POPTRDRAFT_662465; hypothetical protein
nr
ID XP_012090421.1
description PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26241 PE=4 SV=1
Gene Ontology
ID GO:0005789
description protein jagunal homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13021: 501230-503620 , PASA_asmbl_13022: 501325-503646 , PASA_asmbl_13023: 501906-502096
cDNA
(Sanger)
(ID:Location)		 036_J18.ab1: 501389-503646

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_600 0.0 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
2 Hb_081599_010 0.0781600857 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005993_010 0.0860880105 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
4 Hb_000072_300 0.0865047172 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
5 Hb_019181_030 0.0886556409 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
6 Hb_000130_270 0.0894949592 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
7 Hb_000069_640 0.0900870906 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
8 Hb_032202_100 0.0914827067 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
9 Hb_002740_080 0.0927832674 - - flap endonuclease-1, putative [Ricinus communis]
10 Hb_002157_120 0.0945288909 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004055_120 0.0948337634 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
12 Hb_000926_200 0.0972140333 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
13 Hb_000622_130 0.0987719431 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
14 Hb_005535_080 0.0988407537 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
15 Hb_000365_270 0.0991597324 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
16 Hb_000603_160 0.0991843943 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
17 Hb_000705_230 0.0995554701 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
18 Hb_002572_020 0.1020823377 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
19 Hb_000197_020 0.1027226166 - - PREDICTED: protein RER1A [Jatropha curcas]
20 Hb_000080_130 0.1027247026 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]

Gene co-expression network

sample Hb_000152_600 Hb_000152_600 Hb_081599_010 Hb_081599_010 Hb_000152_600--Hb_081599_010 Hb_005993_010 Hb_005993_010 Hb_000152_600--Hb_005993_010 Hb_000072_300 Hb_000072_300 Hb_000152_600--Hb_000072_300 Hb_019181_030 Hb_019181_030 Hb_000152_600--Hb_019181_030 Hb_000130_270 Hb_000130_270 Hb_000152_600--Hb_000130_270 Hb_000069_640 Hb_000069_640 Hb_000152_600--Hb_000069_640 Hb_002740_080 Hb_002740_080 Hb_081599_010--Hb_002740_080 Hb_001227_120 Hb_001227_120 Hb_081599_010--Hb_001227_120 Hb_003498_100 Hb_003498_100 Hb_081599_010--Hb_003498_100 Hb_001279_190 Hb_001279_190 Hb_081599_010--Hb_001279_190 Hb_001269_130 Hb_001269_130 Hb_081599_010--Hb_001269_130 Hb_001609_040 Hb_001609_040 Hb_005993_010--Hb_001609_040 Hb_185830_060 Hb_185830_060 Hb_005993_010--Hb_185830_060 Hb_004055_120 Hb_004055_120 Hb_005993_010--Hb_004055_120 Hb_005993_010--Hb_000069_640 Hb_000705_230 Hb_000705_230 Hb_005993_010--Hb_000705_230 Hb_003540_050 Hb_003540_050 Hb_000072_300--Hb_003540_050 Hb_000072_300--Hb_002740_080 Hb_000359_290 Hb_000359_290 Hb_000072_300--Hb_000359_290 Hb_002686_080 Hb_002686_080 Hb_000072_300--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_000072_300--Hb_005064_010 Hb_013394_050 Hb_013394_050 Hb_019181_030--Hb_013394_050 Hb_007390_020 Hb_007390_020 Hb_019181_030--Hb_007390_020 Hb_010368_050 Hb_010368_050 Hb_019181_030--Hb_010368_050 Hb_019181_030--Hb_001609_040 Hb_000197_020 Hb_000197_020 Hb_019181_030--Hb_000197_020 Hb_032202_100 Hb_032202_100 Hb_000130_270--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_006846_130 Hb_006846_130 Hb_000130_270--Hb_006846_130 Hb_000076_220 Hb_000076_220 Hb_000130_270--Hb_000076_220 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_005653_070 Hb_005653_070 Hb_000069_640--Hb_005653_070 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000069_640--Hb_000705_230 Hb_000069_640--Hb_013394_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.99356 9.72206 24.1137 34.0202 7.48457 10.7814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8074 18.5643 10.1223 12.0931 15.083

CAGE analysis