Hb_000152_650

Information

Type -
Description -
Location Contig152: 546593-549438
Sequence    

Annotation

kegg
ID rcu:RCOM_1500340
description trehalose-6-phosphate synthase, putative
nr
ID XP_002510945.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID O64896
description Trehalose-phosphate phosphatase A OS=Arabidopsis thaliana GN=TPPA PE=1 SV=1
trembl
ID B9R9S0
description Trehalose 6-phosphate phosphatase OS=Ricinus communis GN=RCOM_1500340 PE=3 SV=1
Gene Ontology
ID GO:0004805
description trehalose-phosphate phosphatase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13028: 548546-550169 , PASA_asmbl_13031: 546520-552067 , PASA_asmbl_13032: 549237-549749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_650 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_002121_030 0.0737841545 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
3 Hb_000264_160 0.0778151165 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
4 Hb_001369_590 0.0795007054 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
5 Hb_054615_010 0.0799889451 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
6 Hb_104014_010 0.0882487908 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
7 Hb_005365_040 0.0907906776 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
8 Hb_000051_150 0.0910961539 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
9 Hb_000809_220 0.0972038779 - - PREDICTED: 3-ketodihydrosphingosine reductase [Jatropha curcas]
10 Hb_004003_020 0.0972191031 - - unnamed protein product [Coffea canephora]
11 Hb_002499_050 0.1000121805 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_000431_080 0.1006217285 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
13 Hb_089736_010 0.1051884512 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
14 Hb_046590_010 0.1056526893 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
15 Hb_000107_580 0.1064408619 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
16 Hb_006620_030 0.1069309174 - - nitrate reductase, putative [Ricinus communis]
17 Hb_003077_010 0.1080646719 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001123_340 0.1088532058 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
19 Hb_000084_210 0.1166208589 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
20 Hb_010422_020 0.1174280543 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000152_650 Hb_000152_650 Hb_002121_030 Hb_002121_030 Hb_000152_650--Hb_002121_030 Hb_000264_160 Hb_000264_160 Hb_000152_650--Hb_000264_160 Hb_001369_590 Hb_001369_590 Hb_000152_650--Hb_001369_590 Hb_054615_010 Hb_054615_010 Hb_000152_650--Hb_054615_010 Hb_104014_010 Hb_104014_010 Hb_000152_650--Hb_104014_010 Hb_005365_040 Hb_005365_040 Hb_000152_650--Hb_005365_040 Hb_002121_030--Hb_001369_590 Hb_000051_150 Hb_000051_150 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_002121_030--Hb_054615_010 Hb_002121_030--Hb_005365_040 Hb_001123_340 Hb_001123_340 Hb_000264_160--Hb_001123_340 Hb_000431_080 Hb_000431_080 Hb_000264_160--Hb_000431_080 Hb_003077_010 Hb_003077_010 Hb_000264_160--Hb_003077_010 Hb_000264_160--Hb_005365_040 Hb_000264_160--Hb_104014_010 Hb_001369_590--Hb_005365_040 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_000084_210 Hb_000084_210 Hb_001369_590--Hb_000084_210 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_074240_030 Hb_074240_030 Hb_054615_010--Hb_074240_030 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_104014_010--Hb_000051_150 Hb_001913_070 Hb_001913_070 Hb_104014_010--Hb_001913_070 Hb_010422_020 Hb_010422_020 Hb_104014_010--Hb_010422_020 Hb_104014_010--Hb_001369_590 Hb_104014_010--Hb_005365_040 Hb_005365_040--Hb_000051_150 Hb_000187_100 Hb_000187_100 Hb_005365_040--Hb_000187_100 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_005365_040--Hb_000084_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.354945 9.81827 165.26 32.8131 0.0643515 0.116994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.43223 0.752965 0.547822 1.16328 39.8549

CAGE analysis