Hb_000152_670

Information

Type -
Description -
Location Contig152: 562774-563803
Sequence    

Annotation

kegg
ID brp:103874672
description BAG family molecular chaperone regulator 7
nr
ID CAN71917.1
description hypothetical protein VITISV_037603 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B1L3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037603 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13034: 557265-563549 , PASA_asmbl_13039: 562919-563026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_670 0.0 - - hypothetical protein VITISV_037603 [Vitis vinifera]
2 Hb_001052_040 0.1074435343 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
3 Hb_128376_010 0.1079018443 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000996_180 0.1221392875 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
5 Hb_004017_040 0.1257650296 - - kinetochore protein nuf2, putative [Ricinus communis]
6 Hb_015354_010 0.1304341663 - - PREDICTED: B2 protein [Jatropha curcas]
7 Hb_009646_050 0.1368023049 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000186_260 0.1432097391 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
9 Hb_035318_010 0.1440821587 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
10 Hb_001910_020 0.1441943032 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
11 Hb_003995_010 0.1443735662 - - -
12 Hb_172141_010 0.1480142535 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
13 Hb_002043_090 0.1483235731 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_002411_180 0.1491604547 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
15 Hb_000098_130 0.1492297769 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
16 Hb_002742_080 0.1501095857 - - unknown [Populus trichocarpa]
17 Hb_073973_160 0.1510303744 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_009838_130 0.1512963038 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
19 Hb_003097_180 0.1514160819 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
20 Hb_007403_050 0.1514809866 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000152_670 Hb_000152_670 Hb_001052_040 Hb_001052_040 Hb_000152_670--Hb_001052_040 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_015354_010 Hb_015354_010 Hb_000152_670--Hb_015354_010 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_001052_040--Hb_015354_010 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_002742_080 Hb_002742_080 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_173178_020 Hb_173178_020 Hb_001052_040--Hb_173178_020 Hb_128376_010--Hb_004017_040 Hb_128376_010--Hb_001052_040 Hb_000261_290 Hb_000261_290 Hb_128376_010--Hb_000261_290 Hb_128376_010--Hb_002742_080 Hb_010883_080 Hb_010883_080 Hb_128376_010--Hb_010883_080 Hb_107847_010 Hb_107847_010 Hb_000996_180--Hb_107847_010 Hb_089889_020 Hb_089889_020 Hb_000996_180--Hb_089889_020 Hb_009693_030 Hb_009693_030 Hb_000996_180--Hb_009693_030 Hb_009838_130 Hb_009838_130 Hb_000996_180--Hb_009838_130 Hb_002411_180 Hb_002411_180 Hb_000996_180--Hb_002411_180 Hb_004017_040--Hb_000261_290 Hb_000331_160 Hb_000331_160 Hb_004017_040--Hb_000331_160 Hb_000098_130 Hb_000098_130 Hb_004017_040--Hb_000098_130 Hb_000953_030 Hb_000953_030 Hb_004017_040--Hb_000953_030 Hb_000186_260 Hb_000186_260 Hb_004017_040--Hb_000186_260 Hb_001946_300 Hb_001946_300 Hb_004017_040--Hb_001946_300 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_015354_010--Hb_173178_020 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_015354_010--Hb_002742_080 Hb_000685_080 Hb_000685_080 Hb_009646_050--Hb_000685_080 Hb_002977_010 Hb_002977_010 Hb_009646_050--Hb_002977_010 Hb_000116_570 Hb_000116_570 Hb_009646_050--Hb_000116_570 Hb_000281_010 Hb_000281_010 Hb_009646_050--Hb_000281_010 Hb_009646_050--Hb_010883_080 Hb_000016_280 Hb_000016_280 Hb_009646_050--Hb_000016_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.194 187.734 103.183 75.814 164.444 252.977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.2328 51.6317 16.9847 48.116 4.42598

CAGE analysis