Hb_000152_700

Information

Type -
Description -
Location Contig152: 572890-580488
Sequence    

Annotation

kegg
ID rcu:RCOM_1500380
description protein binding protein, putative
nr
ID XP_012090441.1
description PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
swissprot
ID Q8VYC8
description E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2 PE=1 SV=1
trembl
ID B9R9S4
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1500380 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin protein ligase rin2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13040: 572949-573246 , PASA_asmbl_13041: 573359-574412 , PASA_asmbl_13042: 574474-574679 , PASA_asmbl_13044: 575175-577252 , PASA_asmbl_13045: 577985-580481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_700 0.0 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
2 Hb_004450_070 0.0599103029 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
3 Hb_000649_060 0.0757613965 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
4 Hb_000342_050 0.079025094 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
5 Hb_001097_040 0.0790345135 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
6 Hb_001226_130 0.0790435086 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_020805_180 0.081120196 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
8 Hb_001587_030 0.0812107889 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
9 Hb_004837_280 0.0838068321 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
10 Hb_001085_080 0.0867751595 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
11 Hb_000085_450 0.0876815334 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
12 Hb_001642_070 0.0898071868 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
13 Hb_000674_010 0.0899052862 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
14 Hb_019280_010 0.0902316828 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
15 Hb_007747_170 0.0904428858 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
16 Hb_007137_050 0.0926542831 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_000237_050 0.0936974144 - - CP2 [Hevea brasiliensis]
18 Hb_001811_170 0.0938428705 - - dynamin, putative [Ricinus communis]
19 Hb_002851_010 0.0954583003 - - sugar transporter, putative [Ricinus communis]
20 Hb_000890_070 0.0965554566 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_700 Hb_000152_700 Hb_004450_070 Hb_004450_070 Hb_000152_700--Hb_004450_070 Hb_000649_060 Hb_000649_060 Hb_000152_700--Hb_000649_060 Hb_000342_050 Hb_000342_050 Hb_000152_700--Hb_000342_050 Hb_001097_040 Hb_001097_040 Hb_000152_700--Hb_001097_040 Hb_001226_130 Hb_001226_130 Hb_000152_700--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000152_700--Hb_020805_180 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_001587_030 Hb_001587_030 Hb_000649_060--Hb_001587_030 Hb_000649_060--Hb_001226_130 Hb_000649_060--Hb_020805_180 Hb_000649_060--Hb_000890_070 Hb_000649_060--Hb_004450_070 Hb_004837_280 Hb_004837_280 Hb_000342_050--Hb_004837_280 Hb_001811_170 Hb_001811_170 Hb_000342_050--Hb_001811_170 Hb_000342_050--Hb_001226_130 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_000342_050--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_001226_130--Hb_001587_030 Hb_001226_130--Hb_001811_170 Hb_001226_130--Hb_004837_280 Hb_080147_050 Hb_080147_050 Hb_020805_180--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_020805_180--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_020805_180--Hb_002851_010 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_002027_190 Hb_002027_190 Hb_020805_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99866 12.8251 9.72145 23.2641 8.14907 6.83387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4119 5.94263 5.98056 23.1446 14.7415

CAGE analysis