Hb_000152_740

Information

Type -
Description -
Location Contig152: 604416-608993
Sequence    

Annotation

kegg
ID rcu:RCOM_1500440
description Cisplatin resistance-associated overexpressed protein, putative
nr
ID XP_002510955.1
description Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
swissprot
ID Q5R8W6
description Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1
trembl
ID B9R9T0
description Cisplatin resistance-associated overexpressed protein, putative OS=Ricinus communis GN=RCOM_1500440 PE=4 SV=1
Gene Ontology
ID GO:0005685
description luc7-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13048: 605619-608950 , PASA_asmbl_13049: 605619-608950
cDNA
(Sanger)
(ID:Location)		 004_A08.ab1: 606692-608950 , 028_K11.ab1: 607180-608950

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_740 0.0 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
2 Hb_063047_010 0.0807817978 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
3 Hb_118301_010 0.0823745807 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
4 Hb_005000_100 0.0863531102 - - PCI domain-containing protein 2 [Morus notabilis]
5 Hb_000042_230 0.0864684854 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
6 Hb_000017_340 0.0908957579 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
7 Hb_000028_030 0.093277477 - - amidase, putative [Ricinus communis]
8 Hb_000248_050 0.0961351286 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
9 Hb_004881_050 0.0989390539 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
10 Hb_000136_150 0.1021087354 - - hypothetical protein VITISV_038366 [Vitis vinifera]
11 Hb_000372_040 0.1038268763 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_003711_040 0.1061335454 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
13 Hb_001609_010 0.1115120647 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
14 Hb_005635_010 0.1129988804 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
15 Hb_001252_170 0.1136716351 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
16 Hb_000453_270 0.1169832741 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
17 Hb_002955_010 0.1173053837 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
18 Hb_001307_140 0.1178728421 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
19 Hb_000316_030 0.1181459438 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000568_040 0.1182503978 - - PREDICTED: mRNA-decapping enzyme subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_740 Hb_000152_740 Hb_063047_010 Hb_063047_010 Hb_000152_740--Hb_063047_010 Hb_118301_010 Hb_118301_010 Hb_000152_740--Hb_118301_010 Hb_005000_100 Hb_005000_100 Hb_000152_740--Hb_005000_100 Hb_000042_230 Hb_000042_230 Hb_000152_740--Hb_000042_230 Hb_000017_340 Hb_000017_340 Hb_000152_740--Hb_000017_340 Hb_000028_030 Hb_000028_030 Hb_000152_740--Hb_000028_030 Hb_001609_010 Hb_001609_010 Hb_063047_010--Hb_001609_010 Hb_001040_160 Hb_001040_160 Hb_063047_010--Hb_001040_160 Hb_001871_040 Hb_001871_040 Hb_063047_010--Hb_001871_040 Hb_000316_030 Hb_000316_030 Hb_063047_010--Hb_000316_030 Hb_110364_010 Hb_110364_010 Hb_063047_010--Hb_110364_010 Hb_004881_050 Hb_004881_050 Hb_063047_010--Hb_004881_050 Hb_118301_010--Hb_000017_340 Hb_005288_120 Hb_005288_120 Hb_118301_010--Hb_005288_120 Hb_001252_170 Hb_001252_170 Hb_118301_010--Hb_001252_170 Hb_001477_010 Hb_001477_010 Hb_118301_010--Hb_001477_010 Hb_118301_010--Hb_000028_030 Hb_005000_100--Hb_004881_050 Hb_006913_040 Hb_006913_040 Hb_005000_100--Hb_006913_040 Hb_024990_010 Hb_024990_010 Hb_005000_100--Hb_024990_010 Hb_003581_020 Hb_003581_020 Hb_005000_100--Hb_003581_020 Hb_001221_040 Hb_001221_040 Hb_005000_100--Hb_001221_040 Hb_000042_230--Hb_000028_030 Hb_000042_230--Hb_000017_340 Hb_000186_010 Hb_000186_010 Hb_000042_230--Hb_000186_010 Hb_013405_130 Hb_013405_130 Hb_000042_230--Hb_013405_130 Hb_000042_230--Hb_005288_120 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_000017_340--Hb_005288_120 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_000028_030--Hb_000017_340 Hb_003602_040 Hb_003602_040 Hb_000028_030--Hb_003602_040 Hb_009118_010 Hb_009118_010 Hb_000028_030--Hb_009118_010 Hb_000028_030--Hb_005288_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.8768 36.4359 11.966 20.7415 88.9473 212.426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.34 22.7785 33.1151 45.4031 20.6672

CAGE analysis