Hb_000152_770

Information

Type -
Description -
Location Contig152: 617560-618597
Sequence    

Annotation

kegg
ID rcu:RCOM_1500470
description axonemal dynein light chain, putative
nr
ID XP_012090451.1
description PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
swissprot
ID Q86A88
description Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1
trembl
ID A0A067JSA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26260 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13050: 612940-616936
cDNA
(Sanger)
(ID:Location)		 007_K19.ab1: 612994-616586

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_770 0.0 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
2 Hb_000934_240 0.106017629 - - PREDICTED: peroxidase 13 [Jatropha curcas]
3 Hb_007007_130 0.1151395586 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
4 Hb_004446_060 0.1259623513 - - neutral/alkaline invertase [Manihot esculenta]
5 Hb_003592_060 0.1260090397 - - hypothetical protein F383_11017 [Gossypium arboreum]
6 Hb_001226_100 0.1270288482 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_001500_080 0.1315489198 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
8 Hb_001437_260 0.1383616344 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
9 Hb_006266_010 0.1437268247 - - unnamed protein product [Vitis vinifera]
10 Hb_002851_070 0.1470236775 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
11 Hb_068804_070 0.1500112799 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
12 Hb_001634_030 0.1523616643 - - Receptor like protein 1, putative [Theobroma cacao]
13 Hb_000340_350 0.1524389986 - - PREDICTED: sugar transporter ERD6-like 7 isoform X1 [Jatropha curcas]
14 Hb_000018_120 0.1578676355 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_001186_120 0.1605266121 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
16 Hb_005743_010 0.1610554954 - - RING/U-box superfamily protein, putative [Theobroma cacao]
17 Hb_001439_040 0.1623858281 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
18 Hb_004832_010 0.1631276679 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000941_010 0.1645392827 - - hypothetical protein RCOM_0504460 [Ricinus communis]
20 Hb_009693_010 0.1645624677 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]

Gene co-expression network

sample Hb_000152_770 Hb_000152_770 Hb_000934_240 Hb_000934_240 Hb_000152_770--Hb_000934_240 Hb_007007_130 Hb_007007_130 Hb_000152_770--Hb_007007_130 Hb_004446_060 Hb_004446_060 Hb_000152_770--Hb_004446_060 Hb_003592_060 Hb_003592_060 Hb_000152_770--Hb_003592_060 Hb_001226_100 Hb_001226_100 Hb_000152_770--Hb_001226_100 Hb_001500_080 Hb_001500_080 Hb_000152_770--Hb_001500_080 Hb_000934_240--Hb_001500_080 Hb_000934_240--Hb_003592_060 Hb_009693_010 Hb_009693_010 Hb_000934_240--Hb_009693_010 Hb_000934_240--Hb_004446_060 Hb_002851_070 Hb_002851_070 Hb_000934_240--Hb_002851_070 Hb_007007_130--Hb_004446_060 Hb_007007_130--Hb_002851_070 Hb_023771_030 Hb_023771_030 Hb_007007_130--Hb_023771_030 Hb_007007_130--Hb_001500_080 Hb_001437_260 Hb_001437_260 Hb_007007_130--Hb_001437_260 Hb_002918_120 Hb_002918_120 Hb_004446_060--Hb_002918_120 Hb_004446_060--Hb_001437_260 Hb_004446_060--Hb_002851_070 Hb_021346_020 Hb_021346_020 Hb_004446_060--Hb_021346_020 Hb_004832_010 Hb_004832_010 Hb_004446_060--Hb_004832_010 Hb_006266_010 Hb_006266_010 Hb_003592_060--Hb_006266_010 Hb_005743_010 Hb_005743_010 Hb_003592_060--Hb_005743_010 Hb_068804_070 Hb_068804_070 Hb_003592_060--Hb_068804_070 Hb_003592_060--Hb_009693_010 Hb_002217_060 Hb_002217_060 Hb_003592_060--Hb_002217_060 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_000336_280 Hb_000336_280 Hb_001226_100--Hb_000336_280 Hb_000215_130 Hb_000215_130 Hb_001226_100--Hb_000215_130 Hb_001186_120 Hb_001186_120 Hb_001226_100--Hb_001186_120 Hb_001832_110 Hb_001832_110 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_005333_210 Hb_005333_210 Hb_001226_100--Hb_005333_210 Hb_001500_080--Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_001500_080--Hb_000880_040 Hb_000260_750 Hb_000260_750 Hb_001500_080--Hb_000260_750 Hb_001500_080--Hb_004832_010 Hb_001500_080--Hb_002851_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.409131 3.32218 1.02424 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.088854 0.0698435 0.123633 1.85288 1.23246

CAGE analysis