Hb_000152_780

Information

Type -
Description -
Location Contig152: 619763-620882
Sequence    

Annotation

kegg
ID rcu:RCOM_1500500
description tonoplast intrinsic protein, putative
nr
ID XP_002510961.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID Q9STX9
description Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1
trembl
ID B9R9T6
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_1500500 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable aquaporin tip5-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_780 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_003540_020 0.1417654184 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010267_020 0.1524846036 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
4 Hb_000142_030 0.1535534809 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_000907_140 0.1539284093 - - PREDICTED: annexin D5-like [Jatropha curcas]
6 Hb_003992_130 0.162951334 - - unnamed protein product [Vitis vinifera]
7 Hb_002918_220 0.1647305897 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
8 Hb_004109_100 0.1680895834 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
9 Hb_024494_010 0.1690104359 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_005568_140 0.1705203734 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000027_160 0.1717721957 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
12 Hb_001396_040 0.1733120171 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
13 Hb_000028_250 0.1736558667 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
14 Hb_002205_160 0.1740502321 - - chalcone isomerase [Hibiscus cannabinus]
15 Hb_000200_270 0.1743992372 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
16 Hb_002243_030 0.1755659205 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
17 Hb_169753_010 0.1758343458 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
18 Hb_001606_040 0.1761858748 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
19 Hb_005695_070 0.1772534112 - - Cysteine-rich RLK 29 [Theobroma cacao]
20 Hb_012753_150 0.1779229948 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000152_780 Hb_000152_780 Hb_003540_020 Hb_003540_020 Hb_000152_780--Hb_003540_020 Hb_010267_020 Hb_010267_020 Hb_000152_780--Hb_010267_020 Hb_000142_030 Hb_000142_030 Hb_000152_780--Hb_000142_030 Hb_000907_140 Hb_000907_140 Hb_000152_780--Hb_000907_140 Hb_003992_130 Hb_003992_130 Hb_000152_780--Hb_003992_130 Hb_002918_220 Hb_002918_220 Hb_000152_780--Hb_002918_220 Hb_000111_430 Hb_000111_430 Hb_003540_020--Hb_000111_430 Hb_024494_010 Hb_024494_010 Hb_003540_020--Hb_024494_010 Hb_006570_040 Hb_006570_040 Hb_003540_020--Hb_006570_040 Hb_000034_150 Hb_000034_150 Hb_003540_020--Hb_000034_150 Hb_008725_240 Hb_008725_240 Hb_003540_020--Hb_008725_240 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_010267_020--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_010267_020--Hb_005568_140 Hb_004422_030 Hb_004422_030 Hb_010267_020--Hb_004422_030 Hb_005695_070 Hb_005695_070 Hb_010267_020--Hb_005695_070 Hb_003599_060 Hb_003599_060 Hb_000142_030--Hb_003599_060 Hb_114292_010 Hb_114292_010 Hb_000142_030--Hb_114292_010 Hb_007441_290 Hb_007441_290 Hb_000142_030--Hb_007441_290 Hb_012753_150 Hb_012753_150 Hb_000142_030--Hb_012753_150 Hb_001277_120 Hb_001277_120 Hb_000142_030--Hb_001277_120 Hb_001143_200 Hb_001143_200 Hb_000142_030--Hb_001143_200 Hb_007101_040 Hb_007101_040 Hb_000907_140--Hb_007101_040 Hb_000027_160 Hb_000027_160 Hb_000907_140--Hb_000027_160 Hb_000956_050 Hb_000956_050 Hb_000907_140--Hb_000956_050 Hb_001934_040 Hb_001934_040 Hb_000907_140--Hb_001934_040 Hb_007943_180 Hb_007943_180 Hb_000907_140--Hb_007943_180 Hb_000914_140 Hb_000914_140 Hb_000907_140--Hb_000914_140 Hb_000035_150 Hb_000035_150 Hb_003992_130--Hb_000035_150 Hb_004213_010 Hb_004213_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003626_020 Hb_003626_020 Hb_003992_130--Hb_003626_020 Hb_027337_010 Hb_027337_010 Hb_003992_130--Hb_027337_010 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020 Hb_002918_220--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002918_220--Hb_004109_100 Hb_002918_220--Hb_004422_030 Hb_001571_080 Hb_001571_080 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0969635 0.829301 0.229448 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0578576 0 0.0469479 0.115357

CAGE analysis