Hb_000152_790

Information

Type -
Description -
Location Contig152: 621467-631252
Sequence    

Annotation

kegg
ID rcu:RCOM_1500520
description Structural maintenance of chromosome, putative
nr
ID XP_012090453.1
description PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
swissprot
ID Q9C5Y4
description Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2
trembl
ID B9R9T8
description Structural maintenance of chromosomes protein OS=Ricinus communis GN=RCOM_1500520 PE=3 SV=1
Gene Ontology
ID GO:0000796
description structural maintenance of chromosomes protein 2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13056: 621432-631236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_790 0.0 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
2 Hb_000963_040 0.1201354595 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
3 Hb_004586_150 0.120500365 - - PREDICTED: uncharacterized protein LOC105630688 [Jatropha curcas]
4 Hb_030982_030 0.1253149615 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
5 Hb_002900_080 0.1291740046 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
6 Hb_004096_060 0.1318959663 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
7 Hb_004324_390 0.1330679669 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
8 Hb_003943_050 0.1334018681 - - phosphoglucomutase, putative [Ricinus communis]
9 Hb_003119_090 0.1337971638 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
10 Hb_044662_060 0.1348694698 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
11 Hb_002676_120 0.1350598965 - - hypothetical protein POPTR_0002s23750g [Populus trichocarpa]
12 Hb_010381_010 0.1358080756 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000007_390 0.1369179984 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
14 Hb_000487_180 0.1380050178 - - PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
15 Hb_001227_130 0.1391912387 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
16 Hb_000579_070 0.1393352307 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
17 Hb_000103_120 0.141823588 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
18 Hb_006816_090 0.1418313486 - - PREDICTED: uncharacterized protein LOC105647425 isoform X2 [Jatropha curcas]
19 Hb_002316_070 0.1422930903 - - PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial [Jatropha curcas]
20 Hb_004032_370 0.1436668359 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000152_790 Hb_000152_790 Hb_000963_040 Hb_000963_040 Hb_000152_790--Hb_000963_040 Hb_004586_150 Hb_004586_150 Hb_000152_790--Hb_004586_150 Hb_030982_030 Hb_030982_030 Hb_000152_790--Hb_030982_030 Hb_002900_080 Hb_002900_080 Hb_000152_790--Hb_002900_080 Hb_004096_060 Hb_004096_060 Hb_000152_790--Hb_004096_060 Hb_004324_390 Hb_004324_390 Hb_000152_790--Hb_004324_390 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000600_060 Hb_000600_060 Hb_000963_040--Hb_000600_060 Hb_003119_090 Hb_003119_090 Hb_000963_040--Hb_003119_090 Hb_001227_130 Hb_001227_130 Hb_000963_040--Hb_001227_130 Hb_016347_020 Hb_016347_020 Hb_000963_040--Hb_016347_020 Hb_000579_070 Hb_000579_070 Hb_004586_150--Hb_000579_070 Hb_000184_240 Hb_000184_240 Hb_004586_150--Hb_000184_240 Hb_002676_120 Hb_002676_120 Hb_004586_150--Hb_002676_120 Hb_004586_150--Hb_000963_040 Hb_004137_100 Hb_004137_100 Hb_004586_150--Hb_004137_100 Hb_000261_210 Hb_000261_210 Hb_004586_150--Hb_000261_210 Hb_030982_030--Hb_003119_090 Hb_030982_030--Hb_016347_020 Hb_030982_030--Hb_001227_130 Hb_030982_030--Hb_000600_060 Hb_004324_400 Hb_004324_400 Hb_030982_030--Hb_004324_400 Hb_000022_200 Hb_000022_200 Hb_002900_080--Hb_000022_200 Hb_001205_250 Hb_001205_250 Hb_002900_080--Hb_001205_250 Hb_000007_390 Hb_000007_390 Hb_002900_080--Hb_000007_390 Hb_002900_080--Hb_001227_130 Hb_007919_080 Hb_007919_080 Hb_002900_080--Hb_007919_080 Hb_000445_050 Hb_000445_050 Hb_002900_080--Hb_000445_050 Hb_004032_370 Hb_004032_370 Hb_004096_060--Hb_004032_370 Hb_033642_040 Hb_033642_040 Hb_004096_060--Hb_033642_040 Hb_025668_010 Hb_025668_010 Hb_004096_060--Hb_025668_010 Hb_000724_020 Hb_000724_020 Hb_004096_060--Hb_000724_020 Hb_001002_060 Hb_001002_060 Hb_004096_060--Hb_001002_060 Hb_002326_110 Hb_002326_110 Hb_004096_060--Hb_002326_110 Hb_000103_120 Hb_000103_120 Hb_004324_390--Hb_000103_120 Hb_000890_130 Hb_000890_130 Hb_004324_390--Hb_000890_130 Hb_000340_130 Hb_000340_130 Hb_004324_390--Hb_000340_130 Hb_002686_080 Hb_002686_080 Hb_004324_390--Hb_002686_080 Hb_160256_010 Hb_160256_010 Hb_004324_390--Hb_160256_010 Hb_000261_330 Hb_000261_330 Hb_004324_390--Hb_000261_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00053 1.11526 8.6112 4.68288 4.39087 3.09534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72039 1.3255 2.5301 4.62165 1.99593

CAGE analysis